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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:292.2 nTPM
FANTOM5:218.3 Scaled Tags Per Million
Pig:164.0 nTPM
Allen mouse:18.2 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max nTPM 292.2
Sample id Sample description nTPM
Area postrema
nTPM: 80.9
2054 Male, age 76, both hemispheres 161.3
2306 Male, age 80, both hemispheres 48.1
2799 Male, age 61, both hemispheres 33.3
Dorsal medullary reticular nucleus
nTPM: 190.9
2040 Female, age 85, both hemispheres 263.3
2373 Male, age 61, both hemispheres 160.2
2088 Male, age 76, both hemispheres 149.0
Dorsal motor vagal complex
nTPM: 184.4
2133 Female, age 91, both hemispheres 321.3
2844 Male, age 55, unknown 257.9
2813 Female, age 72, unknown 207.9
2000 Male, age 74, unknown 202.5
2807 Female, age 85, both hemispheres 136.0
2643 Male, age 74, both hemispheres 128.3
2797 Male, age 61, both hemispheres 114.7
2185 Male, age 76, both hemispheres 106.9
Gigantocellular reticular nuclei, medullary
nTPM: 213.0
2462 Male, age 74, both hemispheres 373.1
2310 Male, age 80, both hemispheres 237.4
2022 Male, age 76, right hemisphere 202.9
1876 Female, age 85, both hemispheres 200.5
2387 Female, age 91, both hemispheres 137.1
2314 Male, age 61, both hemispheres 127.3
Gigantocellular reticular nuclei, pars
nTPM: 240.7
2168 Male, age 76, both hemispheres 368.2
2336 Male, age 61, both hemispheres 231.4
2084 Female, age 85, both hemispheres 231.1
2330 Male, age 80, both hemispheres 187.3
2706 Male, age 80, both hemispheres 185.7
Inferior olive
nTPM: 112.1
2085 Female, age 85, both hemispheres 181.3
2628 Female, age 91, both hemispheres 129.8
2563 Male, age 74, both hemispheres 90.1
2178 Male, age 61, both hemispheres 89.2
2379 Male, age 80, both hemispheres 70.3
Lateral medullary reticular nucleus
nTPM: 180.2
2044 Male, age 76, both hemispheres 299.2
2190 Female, age 85, both hemispheres 169.0
2305 Male, age 74, both hemispheres 165.5
2804 Female, age 91, both hemispheres 165.0
2374 Male, age 61, both hemispheres 157.2
2852 Male, age 80, both hemispheres 125.0
Medial olivary nucleus
nTPM: 82.1
2851 Male, age 80, both hemispheres 122.3
1962 Male, age 76, both hemispheres 94.3
2138 Female, age 91, both hemispheres 67.1
1943 Male, age 61, both hemispheres 44.8
Medial vestibular nucleus
nTPM: 255.1
2801 Male, age 74, both hemispheres 293.7
2743 Female, age 85, both hemispheres 287.9
2624 Male, age 61, both hemispheres 247.7
2803 Female, age 91, both hemispheres 239.7
2134 Male, age 76, both hemispheres 233.5
2093 Male, age 80, both hemispheres 228.0
Motor hypoglossal nucleus
nTPM: 227.4
2125 Female, age 91, both hemispheres 276.0
2132 Female, age 85, both hemispheres 255.6
2461 Male, age 61, both hemispheres 250.8
2182 Male, age 80, both hemispheres 183.2
2277 Male, age 76, both hemispheres 171.2
Nucleus ambiguus
nTPM: 235.7
2096 Female, age 85, both hemispheres 376.3
2071 Male, age 76, both hemispheres 95.1
Nucleus cuneatus
nTPM: 139.7
2131 Male, age 76, both hemispheres 215.7
2562 Male, age 61, both hemispheres 188.3
2376 Male, age 61, both hemispheres 170.9
2100 Male, age 76, both hemispheres 159.6
2564 Male, age 74, both hemispheres 158.2
2381 Male, age 80, both hemispheres 119.6
2808 Female, age 85, both hemispheres 92.1
2805 Female, age 91, both hemispheres 89.4
2380 Male, age 80, both hemispheres 63.3
Nucleus gracilis
nTPM: 81.7
2627 Male, age 74, both hemispheres 115.0
2382 Male, age 80, both hemispheres 72.8
2299 Female, age 85, both hemispheres 57.3
Nucleus raphe obscurus
nTPM: 147.6
2800 Male, age 61, midline 196.4
2845 Female, age 85, midline 192.8
2142 Male, age 76, midline 53.7
Nucleus raphe pallidus
nTPM: 151.3
2183 Male, age 80, midline 214.4
1924 Male, age 61, midline 167.6
2145 Male, age 76, midline 72.0
Nucleus tractus solitarii
nTPM: 184.9
2656 Male, age 76, both hemispheres 247.7
2307 Male, age 80, both hemispheres 193.5
2144 Female, age 91, right hemisphere 166.8
2191 Female, age 85, both hemispheres 131.5
Parvicellular reticular nuclei
nTPM: 229.0
2558 Male, age 74, both hemispheres 296.7
2095 Male, age 76, both hemispheres 203.2
2119 Male, age 80, both hemispheres 187.1
Parvicellular reticular nuclei, medullary
nTPM: 251.9
2189 Female, age 91, both hemispheres 287.6
2181 Male, age 80, left hemisphere 242.2
2091 Female, age 85, both hemispheres 226.0
Peritrigeminal nucleus
nTPM: 257.2
2179 Male, age 61, both hemispheres 297.0
2067 Female, age 85, both hemispheres 240.6
2136 Male, age 76, both hemispheres 233.9
Prepositus hypoglossal nucleus
nTPM: 235.4
2855 Female, age 85, right hemisphere 263.9
2086 Male, age 80, both hemispheres 206.8
Spinal trigeminal nucleus, caudal
nTPM: 210.1
2390 Female, age 91, both hemispheres 295.8
2447 Male, age 76, both hemispheres 228.5
2642 Male, age 74, both hemispheres 207.1
2308 Male, age 80, both hemispheres 162.9
2312 Male, age 61, both hemispheres 156.4
Spinal trigeminal nucleus, interpolar
nTPM: 292.2
2066 Male, age 76, right hemisphere 422.7
2625 Male, age 61, both hemispheres 307.9
2389 Female, age 91, both hemispheres 269.5
2386 Female, age 85, both hemispheres 233.0
2033 Male, age 80, both hemispheres 227.7
Spinal vestibular nucleus
nTPM: 208.1
2186 Female, age 91, both hemispheres 259.5
2780 Male, age 80, both hemispheres 251.6
2796 Male, age 61, both hemispheres 213.3
2806 Female, age 85, both hemispheres 211.4
2748 Male, age 76, both hemispheres 190.0
2384 Male, age 74, both hemispheres 122.8
Superior vestibular nucleus
nTPM: 158.8
2015 Male, age 80, both hemispheres 192.9
2061 Male, age 76, both hemispheres 174.0
2383 Male, age 74, both hemispheres 109.6
Ventral medullary reticular nucleus
nTPM: 176.0
2060 Male, age 76, both hemispheres 204.5
2372 Male, age 61, both hemispheres 147.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 216.0
2741 Female, age 85, both hemispheres 284.4
1986 Male, age 76, both hemispheres 267.1
2180 Male, age 61, both hemispheres 220.8
2302 Female, age 91, both hemispheres 174.7
2118 Male, age 80, both hemispheres 132.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max Scaled Tags Per Million 218.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 218.3
FF:10038-101F2 18-64 years, mixed 365.4
FF:10174-103C3 60 years, female 169.5
FF:10155-103A2 76 years, female 120.0

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM 164.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 164.0
Samples: 4

Max nTPM: 200.3
Min nTPM: 108.0
Sample A Female 182.4
Sample B Female 200.3
Sample C Male 165.4
Sample D Male 108.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max Expression energy 18.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 18.2
73584747 Antisense, RP_051206_01_A06, Mouse strain C57BL/6J (56 days, male) 18.2

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