MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.5 nTPM
HPA Brain:9.5 nTPM
GTEx:7.5 nTPM
FANTOM5:15.0 Scaled Tags Per Million
Pig:6.5 nTPM
Mouse:2.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 9.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.5
2019 Male, age 18, unknown 13.0
1830 Male, age 51, unknown 11.5
1870 Female, age 42, unknown 11.5
1833 Male, age 53, unknown 10.5
2411 Female, age 72, unknown 10.0
2586 Male, age 75, left hemisphere 9.9
2828 Female, age 72, unknown 8.4
2666 Male, age 74, left hemisphere 7.8
1827 Male, age 72, unknown 7.2
2219 Male, age 76, both hemispheres 5.0
Dorsal raphe nucleus
nTPM: 7.4
1828 Male, age 53, unknown 8.3
2016 Female, age 72, unknown 8.2
2750 Male, age 76, both hemispheres 8.1
2047 Male, age 72, unknown 6.4
2298 Female, age 72, unknown 6.2
Inferior colliculus
nTPM: 8.2
1848 Female, age 42, unknown 11.0
2849 Male, age 72, unknown 10.2
2097 Female, age 72, unknown 6.1
1890 Male, age 53, unknown 5.6
Median raphe nucleus
nTPM: 4.6
2220 Male, age 76, midline 4.6
Periaquaductal grey, anterior
nTPM: 5.8
2502 Female, age 75, unknown 7.0
1795 Male, age 51, unknown 5.9
1947 Male, age 18, unknown 4.5
Periaquaductal grey, dorsal
nTPM: 5.9
2464 Female, age 72, unknown 7.4
1831 Male, age 72, unknown 6.1
1840 Male, age 53, unknown 5.9
2850 Male, age 76, both hemispheres 4.3
Periaquaductal grey, lateral
nTPM: 7.2
2272 Male, age 74, both hemispheres 9.0
2140 Male, age 76, both hemispheres 6.6
2053 Male, age 18, unknown 6.0
Pretectal area
nTPM: 6.4
2825 Male, age 18, unknown 8.3
2316 Male, age 76, right hemisphere 8.0
2407 Male, age 75, both hemispheres 8.0
2273 Male, age 74, both hemispheres 7.6
2007 Male, age 72, unknown 7.3
1817 Female, age 42, unknown 6.2
2667 Female, age 75, unknown 6.0
2224 Female, age 72, unknown 5.7
1815 Male, age 53, unknown 4.6
1944 Female, age 72, unknown 4.3
1816 Male, age 51, unknown 4.0
Red nucleus
nTPM: 9.3
2769 Male, age 72, unknown 11.1
2785 Male, age 18, unknown 10.8
2588 Male, age 74, left hemisphere 10.7
2227 Male, age 72, unknown 10.1
1865 Male, age 51, unknown 9.6
2503 Female, age 72, unknown 9.6
1821 Female, age 72, unknown 9.5
1954 Female, age 42, unknown 8.4
2823 Male, age 76, right hemisphere 8.3
2584 Male, age 75, left hemisphere 8.2
2725 Female, age 75, unknown 7.7
1904 Male, age 53, unknown 7.6
Substantia nigra
nTPM: 7.2
1941 Male, age 53, unknown 12.3
2583 Male, age 75, right hemisphere 7.9
2665 Male, age 74, both hemispheres 7.4
1851 Male, age 51, unknown 7.2
2590 Female, age 75, unknown 7.1
2699 Male, age 18, unknown 7.0
2409 Female, age 72, unknown 6.6
1889 Female, age 72, unknown 5.7
1916 Female, age 42, unknown 5.6
2241 Male, age 72, unknown 4.9
Superior colliculus
nTPM: 8.0
1839 Male, age 51, unknown 11.8
1895 Male, age 76, right hemisphere 9.4
1913 Female, age 42, unknown 8.7
2664 Male, age 75, both hemispheres 7.9
2668 Female, age 75, unknown 7.9
1995 Male, age 72, unknown 7.8
2587 Male, age 74, left hemisphere 7.8
1796 Male, age 53, unknown 7.5
2087 Female, age 72, unknown 5.7
2261 Male, age 18, unknown 5.0
Ventral tegmental area
nTPM: 5.9
2223 Female, age 72, unknown 7.4
2410 Female, age 72, unknown 7.2
1915 Female, age 42, unknown 6.7
2021 Male, age 53, unknown 5.8
2218 Male, age 76, both hemispheres 4.5
1942 Male, age 51, unknown 4.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.5
Samples: 139

Max nTPM: 22.3
Min nTPM: 3.4
Std nTPM: 2.8
Median nTPM: 6.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 22.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 18.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 16.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 15.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 13.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 12.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 12.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 12.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 11.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.0
FF:10158-103A5 76 years, female 15.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.5
Samples: 4

Max nTPM: 7.5
Min nTPM: 5.6
Sample A Female 5.6
Sample B Female 6.4
Sample C Male 6.4
Sample D Male 7.5
Midbrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.7
Sample A Female 6.1
Sample B Female 5.7
Sample C Male 5.1
Sample D Male 4.7
Periaqueductal gray
nTPM: 5.3
Samples: 3

Max nTPM: 5.7
Min nTPM: 5.0
Sample B Female 5.3
Sample C Male 5.0
Sample D Male 5.7
Superior colliculi
nTPM: 6.0
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 7.2
Sample C Male 5.9
Sample D Male 5.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.7
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.1
Sample A Male 3.4
Sample B Male 2.1
Sample C Female 2.8
Sample D Female 2.3

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