MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:166.8 nTPM
HPA Brain:1247.5 nTPM
GTEx:166.8 nTPM
FANTOM5:319.2 Scaled Tags Per Million
Pig:113.7 nTPM
Mouse:74.6 nTPM
Allen mouse:10.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 1247.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1233.7
2586 Male, age 75, left hemisphere 2004.0
2411 Female, age 72, unknown 1353.0
2666 Male, age 74, left hemisphere 1262.0
1870 Female, age 42, unknown 1194.3
1833 Male, age 53, unknown 1192.6
2219 Male, age 76, both hemispheres 1188.5
2019 Male, age 18, unknown 1139.0
1830 Male, age 51, unknown 1128.0
2828 Female, age 72, unknown 1008.9
1827 Male, age 72, unknown 866.4
Dorsal raphe nucleus
nTPM: 1072.2
2750 Male, age 76, both hemispheres 1389.1
2016 Female, age 72, unknown 1024.6
2298 Female, age 72, unknown 1011.0
1828 Male, age 53, unknown 975.2
2047 Male, age 72, unknown 960.9
Inferior colliculus
nTPM: 1043.7
1890 Male, age 53, unknown 1201.2
2849 Male, age 72, unknown 1163.8
2097 Female, age 72, unknown 924.2
1848 Female, age 42, unknown 885.7
Median raphe nucleus
nTPM: 1224.2
2220 Male, age 76, midline 1224.2
Periaquaductal grey, anterior
nTPM: 1214.3
2502 Female, age 75, unknown 1658.8
1795 Male, age 51, unknown 1188.0
1947 Male, age 18, unknown 796.3
Periaquaductal grey, dorsal
nTPM: 1026.0
2464 Female, age 72, unknown 1328.9
2850 Male, age 76, both hemispheres 1151.8
1840 Male, age 53, unknown 948.2
1831 Male, age 72, unknown 675.1
Periaquaductal grey, lateral
nTPM: 852.7
2140 Male, age 76, both hemispheres 1030.0
2053 Male, age 18, unknown 884.0
2272 Male, age 74, both hemispheres 644.0
Pretectal area
nTPM: 946.1
2007 Male, age 72, unknown 1305.6
2224 Female, age 72, unknown 1232.4
2667 Female, age 75, unknown 976.3
1817 Female, age 42, unknown 962.9
2825 Male, age 18, unknown 944.3
1815 Male, age 53, unknown 937.8
1816 Male, age 51, unknown 924.7
2316 Male, age 76, right hemisphere 814.7
1944 Female, age 72, unknown 792.2
2407 Male, age 75, both hemispheres 784.9
2273 Male, age 74, both hemispheres 731.6
Red nucleus
nTPM: 1247.5
2503 Female, age 72, unknown 1772.9
2227 Male, age 72, unknown 1525.1
2769 Male, age 72, unknown 1487.6
2785 Male, age 18, unknown 1397.6
1865 Male, age 51, unknown 1338.2
1904 Male, age 53, unknown 1293.5
2588 Male, age 74, left hemisphere 1250.6
1954 Female, age 42, unknown 1190.3
2584 Male, age 75, left hemisphere 1126.5
2725 Female, age 75, unknown 888.6
2823 Male, age 76, right hemisphere 882.5
1821 Female, age 72, unknown 816.2
Substantia nigra
nTPM: 911.7
2699 Male, age 18, unknown 1062.6
1851 Male, age 51, unknown 1033.2
2665 Male, age 74, both hemispheres 1026.4
2583 Male, age 75, right hemisphere 1008.3
2590 Female, age 75, unknown 917.2
1889 Female, age 72, unknown 909.4
1916 Female, age 42, unknown 861.6
2409 Female, age 72, unknown 801.7
1941 Male, age 53, unknown 768.2
2241 Male, age 72, unknown 728.6
Superior colliculus
nTPM: 1106.9
2587 Male, age 74, left hemisphere 1327.7
2664 Male, age 75, both hemispheres 1296.8
1995 Male, age 72, unknown 1272.6
2261 Male, age 18, unknown 1170.3
1796 Male, age 53, unknown 1169.9
1913 Female, age 42, unknown 1106.7
1839 Male, age 51, unknown 1008.3
2668 Female, age 75, unknown 987.4
2087 Female, age 72, unknown 872.0
1895 Male, age 76, right hemisphere 856.9
Ventral tegmental area
nTPM: 1144.7
2223 Female, age 72, unknown 1501.9
2218 Male, age 76, both hemispheres 1217.4
2021 Male, age 53, unknown 1155.7
1915 Female, age 42, unknown 1080.1
1942 Male, age 51, unknown 1027.8
2410 Female, age 72, unknown 885.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 166.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 166.8
Samples: 139

Max nTPM: 727.0
Min nTPM: 45.3
Std nTPM: 102.9
Median nTPM: 133.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 727.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 529.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 456.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 439.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 431.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 423.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 379.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 361.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 361.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 350.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 329.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 319.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 319.2
FF:10158-103A5 76 years, female 319.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 113.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 113.7
Samples: 4

Max nTPM: 162.5
Min nTPM: 79.6
Sample A Female 120.2
Sample B Female 79.6
Sample C Male 92.5
Sample D Male 162.5
Midbrain
nTPM: 98.8
Samples: 4

Max nTPM: 134.5
Min nTPM: 70.8
Sample A Female 134.5
Sample B Female 116.1
Sample C Male 70.8
Sample D Male 73.8
Periaqueductal gray
nTPM: 82.4
Samples: 3

Max nTPM: 96.0
Min nTPM: 72.3
Sample B Female 96.0
Sample C Male 72.3
Sample D Male 78.9
Superior colliculi
nTPM: 90.7
Samples: 4

Max nTPM: 113.6
Min nTPM: 45.3
Sample A Female 113.6
Sample B Female 45.3
Sample C Male 96.4
Sample D Male 107.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 74.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 74.6
Samples: 4

Max nTPM: 82.9
Min nTPM: 66.2
Sample A Male 82.9
Sample B Male 71.7
Sample C Female 66.2
Sample D Female 77.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.3
1881 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 10.3
1880 Antisense, RP_040604_01_D07, Mouse strain C57BL/6J (56 days, male) 7.7

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