MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.7 nTPM
HPA Brain:56.3 nTPM
GTEx:23.7 nTPM
FANTOM5:84.5 Scaled Tags Per Million
Pig:66.1 nTPM
Mouse:62.3 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.1
1870 Female, age 42, unknown 58.0
2019 Male, age 18, unknown 56.1
1833 Male, age 53, unknown 53.9
2411 Female, age 72, unknown 52.5
1830 Male, age 51, unknown 52.3
1827 Male, age 72, unknown 48.6
2828 Female, age 72, unknown 48.6
2586 Male, age 75, left hemisphere 48.1
2219 Male, age 76, both hemispheres 47.1
2666 Male, age 74, left hemisphere 46.1
Dorsal raphe nucleus
nTPM: 51.7
2750 Male, age 76, both hemispheres 56.5
1828 Male, age 53, unknown 51.5
2298 Female, age 72, unknown 50.7
2047 Male, age 72, unknown 50.0
2016 Female, age 72, unknown 49.9
Inferior colliculus
nTPM: 52.6
1848 Female, age 42, unknown 53.4
1890 Male, age 53, unknown 53.1
2849 Male, age 72, unknown 52.8
2097 Female, age 72, unknown 51.2
Median raphe nucleus
nTPM: 54.7
2220 Male, age 76, midline 54.7
Periaquaductal grey, anterior
nTPM: 47.3
1947 Male, age 18, unknown 50.0
2502 Female, age 75, unknown 48.7
1795 Male, age 51, unknown 43.4
Periaquaductal grey, dorsal
nTPM: 50.1
2850 Male, age 76, both hemispheres 53.1
1840 Male, age 53, unknown 50.7
1831 Male, age 72, unknown 48.4
2464 Female, age 72, unknown 48.3
Periaquaductal grey, lateral
nTPM: 50.5
2140 Male, age 76, both hemispheres 53.2
2272 Male, age 74, both hemispheres 50.1
2053 Male, age 18, unknown 48.1
Pretectal area
nTPM: 53.7
1817 Female, age 42, unknown 61.8
2667 Female, age 75, unknown 59.5
1816 Male, age 51, unknown 56.1
2007 Male, age 72, unknown 54.5
1815 Male, age 53, unknown 54.0
1944 Female, age 72, unknown 53.4
2224 Female, age 72, unknown 52.5
2316 Male, age 76, right hemisphere 52.2
2273 Male, age 74, both hemispheres 51.2
2825 Male, age 18, unknown 48.0
2407 Male, age 75, both hemispheres 47.5
Red nucleus
nTPM: 56.3
1821 Female, age 72, unknown 64.8
1865 Male, age 51, unknown 61.1
2725 Female, age 75, unknown 59.2
1904 Male, age 53, unknown 58.9
1954 Female, age 42, unknown 58.8
2503 Female, age 72, unknown 57.1
2823 Male, age 76, right hemisphere 55.8
2227 Male, age 72, unknown 55.6
2785 Male, age 18, unknown 55.0
2769 Male, age 72, unknown 52.7
2588 Male, age 74, left hemisphere 49.5
2584 Male, age 75, left hemisphere 46.9
Substantia nigra
nTPM: 55.6
2241 Male, age 72, unknown 66.6
2409 Female, age 72, unknown 60.8
1889 Female, age 72, unknown 57.3
1916 Female, age 42, unknown 57.0
1851 Male, age 51, unknown 55.5
2699 Male, age 18, unknown 54.6
1941 Male, age 53, unknown 52.3
2665 Male, age 74, both hemispheres 51.9
2590 Female, age 75, unknown 50.4
2583 Male, age 75, right hemisphere 49.1
Superior colliculus
nTPM: 50.5
1913 Female, age 42, unknown 56.3
2587 Male, age 74, left hemisphere 54.3
1895 Male, age 76, right hemisphere 53.4
2261 Male, age 18, unknown 52.3
1839 Male, age 51, unknown 51.8
1796 Male, age 53, unknown 50.5
2087 Female, age 72, unknown 50.2
1995 Male, age 72, unknown 49.3
2668 Female, age 75, unknown 45.7
2664 Male, age 75, both hemispheres 41.5
Ventral tegmental area
nTPM: 52.9
2218 Male, age 76, both hemispheres 56.4
2223 Female, age 72, unknown 56.1
2410 Female, age 72, unknown 54.9
1915 Female, age 42, unknown 53.5
2021 Male, age 53, unknown 49.0
1942 Male, age 51, unknown 47.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.7
Samples: 139

Max nTPM: 34.5
Min nTPM: 16.3
Std nTPM: 3.8
Median nTPM: 23.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 34.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 33.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 32.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 32.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 32.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 31.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 30.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 30.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 29.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 29.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.5
FF:10158-103A5 76 years, female 84.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 66.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 62.4
Samples: 4

Max nTPM: 74.7
Min nTPM: 54.2
Sample A Female 74.7
Sample B Female 54.2
Sample C Male 61.5
Sample D Male 59.2
Midbrain
nTPM: 66.1
Samples: 4

Max nTPM: 85.9
Min nTPM: 55.0
Sample A Female 85.9
Sample B Female 59.5
Sample C Male 63.9
Sample D Male 55.0
Periaqueductal gray
nTPM: 56.3
Samples: 3

Max nTPM: 60.8
Min nTPM: 51.6
Sample B Female 56.4
Sample C Male 60.8
Sample D Male 51.6
Superior colliculi
nTPM: 64.5
Samples: 4

Max nTPM: 73.1
Min nTPM: 55.2
Sample A Female 73.1
Sample B Female 55.2
Sample C Male 67.0
Sample D Male 62.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 62.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 62.4
Samples: 4

Max nTPM: 66.3
Min nTPM: 56.2
Sample A Male 56.2
Sample B Male 62.1
Sample C Female 66.3
Sample D Female 64.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71763786 Antisense, RP_050921_02_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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