MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.8 nTPM
HPA Brain:23.7 nTPM
GTEx:8.8 nTPM
FANTOM5:23.2 Scaled Tags Per Million
Pig:26.4 nTPM
Mouse:2.4 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 23.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.1
2019 Male, age 18, unknown 23.5
1827 Male, age 72, unknown 22.4
2219 Male, age 76, both hemispheres 21.6
2586 Male, age 75, left hemisphere 20.8
1830 Male, age 51, unknown 20.2
2828 Female, age 72, unknown 20.1
2666 Male, age 74, left hemisphere 19.0
1833 Male, age 53, unknown 18.7
2411 Female, age 72, unknown 18.1
1870 Female, age 42, unknown 16.9
Dorsal raphe nucleus
nTPM: 20.3
1828 Male, age 53, unknown 21.8
2016 Female, age 72, unknown 21.8
2047 Male, age 72, unknown 21.0
2298 Female, age 72, unknown 20.8
2750 Male, age 76, both hemispheres 16.3
Inferior colliculus
nTPM: 23.7
2097 Female, age 72, unknown 25.1
1890 Male, age 53, unknown 23.7
1848 Female, age 42, unknown 23.5
2849 Male, age 72, unknown 22.6
Median raphe nucleus
nTPM: 20.6
2220 Male, age 76, midline 20.6
Periaquaductal grey, anterior
nTPM: 19.1
2502 Female, age 75, unknown 19.9
1795 Male, age 51, unknown 19.5
1947 Male, age 18, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 21.9
1840 Male, age 53, unknown 25.6
1831 Male, age 72, unknown 22.2
2464 Female, age 72, unknown 21.3
2850 Male, age 76, both hemispheres 18.3
Periaquaductal grey, lateral
nTPM: 21.0
2140 Male, age 76, both hemispheres 22.9
2053 Male, age 18, unknown 20.1
2272 Male, age 74, both hemispheres 20.1
Pretectal area
nTPM: 21.7
1944 Female, age 72, unknown 24.5
1816 Male, age 51, unknown 23.4
2007 Male, age 72, unknown 23.4
1817 Female, age 42, unknown 22.8
2316 Male, age 76, right hemisphere 22.0
2407 Male, age 75, both hemispheres 21.6
2273 Male, age 74, both hemispheres 21.1
1815 Male, age 53, unknown 20.5
2224 Female, age 72, unknown 20.2
2825 Male, age 18, unknown 19.9
2667 Female, age 75, unknown 19.2
Red nucleus
nTPM: 18.4
2584 Male, age 75, left hemisphere 21.9
2588 Male, age 74, left hemisphere 19.9
2785 Male, age 18, unknown 19.6
2503 Female, age 72, unknown 19.1
2725 Female, age 75, unknown 18.8
2823 Male, age 76, right hemisphere 18.4
1821 Female, age 72, unknown 17.6
2227 Male, age 72, unknown 17.4
2769 Male, age 72, unknown 17.2
1865 Male, age 51, unknown 17.1
1954 Female, age 42, unknown 17.0
1904 Male, age 53, unknown 16.8
Substantia nigra
nTPM: 20.2
2665 Male, age 74, both hemispheres 23.8
2590 Female, age 75, unknown 22.4
2583 Male, age 75, right hemisphere 22.0
2409 Female, age 72, unknown 20.7
2241 Male, age 72, unknown 19.7
1941 Male, age 53, unknown 19.3
1916 Female, age 42, unknown 19.0
1851 Male, age 51, unknown 18.8
1889 Female, age 72, unknown 18.7
2699 Male, age 18, unknown 17.4
Superior colliculus
nTPM: 21.5
2664 Male, age 75, both hemispheres 26.1
2087 Female, age 72, unknown 25.6
2261 Male, age 18, unknown 23.7
1796 Male, age 53, unknown 21.0
1895 Male, age 76, right hemisphere 20.4
2587 Male, age 74, left hemisphere 20.3
2668 Female, age 75, unknown 20.2
1839 Male, age 51, unknown 20.1
1995 Male, age 72, unknown 19.9
1913 Female, age 42, unknown 17.6
Ventral tegmental area
nTPM: 18.8
1942 Male, age 51, unknown 20.6
2021 Male, age 53, unknown 19.4
1915 Female, age 42, unknown 19.1
2218 Male, age 76, both hemispheres 18.4
2223 Female, age 72, unknown 18.1
2410 Female, age 72, unknown 17.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 8.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.8
Samples: 139

Max nTPM: 14.9
Min nTPM: 4.6
Std nTPM: 1.9
Median nTPM: 8.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 14.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 13.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 13.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 13.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 12.7
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 12.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 12.3
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 12.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 12.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 11.9
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 11.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.2
FF:10158-103A5 76 years, female 23.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.3
Samples: 4

Max nTPM: 27.4
Min nTPM: 23.1
Sample A Female 25.5
Sample B Female 27.4
Sample C Male 25.0
Sample D Male 23.1
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 28.7
Min nTPM: 16.4
Sample A Female 28.7
Sample B Female 24.0
Sample C Male 19.9
Sample D Male 16.4
Periaqueductal gray
nTPM: 26.4
Samples: 3

Max nTPM: 30.4
Min nTPM: 24.1
Sample B Female 24.6
Sample C Male 30.4
Sample D Male 24.1
Superior colliculi
nTPM: 25.5
Samples: 4

Max nTPM: 35.9
Min nTPM: 20.3
Sample A Female 25.1
Sample B Female 35.9
Sample C Male 20.3
Sample D Male 20.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.4
Samples: 4

Max nTPM: 2.7
Min nTPM: 2.1
Sample A Male 2.1
Sample B Male 2.6
Sample C Female 2.7
Sample D Female 2.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68843931 Antisense, RP_050217_02_E10, Mouse strain C57BL/6J (56 days, male) 2.2

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