MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:43.4 nTPM
GTEx:14.2 nTPM
FANTOM5:79.7 Scaled Tags Per Million
Pig:21.3 nTPM
Mouse:8.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.0
1830 Male, age 51, unknown 48.2
2411 Female, age 72, unknown 42.3
1870 Female, age 42, unknown 41.1
1833 Male, age 53, unknown 39.9
2019 Male, age 18, unknown 38.3
2828 Female, age 72, unknown 28.3
1827 Male, age 72, unknown 26.5
2666 Male, age 74, left hemisphere 26.3
2219 Male, age 76, both hemispheres 20.6
2586 Male, age 75, left hemisphere 18.4
Dorsal raphe nucleus
nTPM: 26.5
2750 Male, age 76, both hemispheres 40.5
2016 Female, age 72, unknown 28.3
1828 Male, age 53, unknown 25.8
2047 Male, age 72, unknown 21.9
2298 Female, age 72, unknown 16.0
Inferior colliculus
nTPM: 24.8
1848 Female, age 42, unknown 26.5
1890 Male, age 53, unknown 25.9
2849 Male, age 72, unknown 25.2
2097 Female, age 72, unknown 21.5
Median raphe nucleus
nTPM: 25.0
2220 Male, age 76, midline 25.0
Periaquaductal grey, anterior
nTPM: 21.7
1947 Male, age 18, unknown 25.4
2502 Female, age 75, unknown 21.6
1795 Male, age 51, unknown 18.0
Periaquaductal grey, dorsal
nTPM: 23.1
2464 Female, age 72, unknown 31.2
1831 Male, age 72, unknown 23.8
2850 Male, age 76, both hemispheres 19.6
1840 Male, age 53, unknown 17.6
Periaquaductal grey, lateral
nTPM: 23.7
2053 Male, age 18, unknown 25.5
2140 Male, age 76, both hemispheres 23.5
2272 Male, age 74, both hemispheres 22.1
Pretectal area
nTPM: 24.8
2316 Male, age 76, right hemisphere 36.8
1815 Male, age 53, unknown 33.5
2667 Female, age 75, unknown 28.1
2407 Male, age 75, both hemispheres 26.8
1817 Female, age 42, unknown 25.7
2273 Male, age 74, both hemispheres 22.9
2007 Male, age 72, unknown 22.5
2224 Female, age 72, unknown 22.5
2825 Male, age 18, unknown 21.3
1944 Female, age 72, unknown 17.8
1816 Male, age 51, unknown 14.8
Red nucleus
nTPM: 43.4
1865 Male, age 51, unknown 54.1
2823 Male, age 76, right hemisphere 50.9
1821 Female, age 72, unknown 50.5
1904 Male, age 53, unknown 47.5
2503 Female, age 72, unknown 45.5
2769 Male, age 72, unknown 43.1
1954 Female, age 42, unknown 42.3
2785 Male, age 18, unknown 41.8
2227 Male, age 72, unknown 39.5
2588 Male, age 74, left hemisphere 39.0
2725 Female, age 75, unknown 35.7
2584 Male, age 75, left hemisphere 30.5
Substantia nigra
nTPM: 32.7
2409 Female, age 72, unknown 41.4
2590 Female, age 75, unknown 38.4
2699 Male, age 18, unknown 36.6
2583 Male, age 75, right hemisphere 36.2
2241 Male, age 72, unknown 36.1
1851 Male, age 51, unknown 34.6
1889 Female, age 72, unknown 30.5
1941 Male, age 53, unknown 26.1
2665 Male, age 74, both hemispheres 23.6
1916 Female, age 42, unknown 23.1
Superior colliculus
nTPM: 29.8
1913 Female, age 42, unknown 48.9
1895 Male, age 76, right hemisphere 40.3
1995 Male, age 72, unknown 37.0
2587 Male, age 74, left hemisphere 36.2
1839 Male, age 51, unknown 31.5
2668 Female, age 75, unknown 24.2
1796 Male, age 53, unknown 21.8
2087 Female, age 72, unknown 21.1
2664 Male, age 75, both hemispheres 18.6
2261 Male, age 18, unknown 18.4
Ventral tegmental area
nTPM: 32.7
2223 Female, age 72, unknown 46.9
2410 Female, age 72, unknown 39.7
2021 Male, age 53, unknown 30.9
1915 Female, age 42, unknown 26.8
1942 Male, age 51, unknown 26.1
2218 Male, age 76, both hemispheres 25.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 139

Max nTPM: 50.5
Min nTPM: 4.5
Std nTPM: 6.5
Median nTPM: 12.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 50.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 40.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 35.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 32.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 29.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 28.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 25.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 24.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 23.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 79.7
FF:10158-103A5 76 years, female 79.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.1
Samples: 4

Max nTPM: 26.9
Min nTPM: 16.2
Sample A Female 19.0
Sample B Female 22.1
Sample C Male 16.2
Sample D Male 26.9
Midbrain
nTPM: 21.3
Samples: 4

Max nTPM: 26.8
Min nTPM: 13.9
Sample A Female 25.6
Sample B Female 26.8
Sample C Male 13.9
Sample D Male 18.9
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 22.9
Min nTPM: 12.5
Sample B Female 22.9
Sample C Male 12.5
Sample D Male 16.7
Superior colliculi
nTPM: 19.7
Samples: 4

Max nTPM: 21.0
Min nTPM: 16.6
Sample A Female 21.0
Sample B Female 20.5
Sample C Male 16.6
Sample D Male 20.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.3
Samples: 4

Max nTPM: 9.2
Min nTPM: 7.2
Sample A Male 7.2
Sample B Male 7.4
Sample C Female 9.2
Sample D Female 9.2

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