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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
34.3
nTPM
FANTOM5:
69.7
Scaled Tags Per Million
Pig:
93.5
nTPM
PONS - HPA Brain RNA-seq
Max nTPM
34.3
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 19.5
1984
Male, age 76, both hemispheres
33.7
2301
Female, age 85, both hemispheres
15.4
2188
Female, age 91, both hemispheres
14.8
2090
Male, age 80, both hemispheres
14.3
Dorsal cochlear nucleus nTPM: 15.9
2058
Male, age 76, both hemispheres
23.5
2187
Female, age 91, both hemispheres
20.8
2370
Male, age 61, both hemispheres
14.7
2378
Male, age 80, both hemispheres
11.7
2802
Male, age 74, right hemisphere
8.6
Dorsal tegmental nucleus nTPM: 20.6
2083
Male, age 80, both hemispheres
24.1
2326
Male, age 74, both hemispheres
22.7
1936
Male, age 76, left hemisphere
19.0
2358
Male, age 61, both hemispheres
16.7
Dorsolateral tegmental area nTPM: 25.7
2360
Male, age 74, both hemispheres
45.2
2141
Male, age 76, both hemispheres
28.3
2654
Male, age 80, both hemispheres
22.5
2751
Female, age 85, both hemispheres
19.9
2337
Male, age 61, both hemispheres
12.6
Kolliker-Fuse nucleus nTPM: 20.3
2163
Male, age 80, both hemispheres
24.9
2315
Male, age 76, right hemisphere
19.9
2793
Female, age 91, left hemisphere
16.2
Lateral lemniscal nuclei nTPM: 23.8
2169
Male, age 76, both hemispheres
34.7
2036
Male, age 80, both hemispheres
25.4
2746
Female, age 85, left hemisphere
24.0
2453
Male, age 74, right hemisphere
18.4
2320
Female, age 91, left hemisphere
16.5
Lateral parabrachial nucleus nTPM: 19.9
2139
Female, age 85, right hemisphere
29.2
2013
Male, age 80, both hemispheres
20.2
2790
Male, age 61, both hemispheres
19.9
2792
Male, age 76, both hemispheres
10.3
Lateral vestibular nucleus nTPM: 19.1
2184
Male, age 76, both hemispheres
20.6
2311
Male, age 80, both hemispheres
17.6
Locus coeruleus nTPM: 34.3
2123
Female, age 91, both hemispheres
45.9
2788
Male, age 74, unknown
38.7
2014
Male, age 55, unknown
37.5
1980
Male, age 76, both hemispheres
33.2
2162
Male, age 80, both hemispheres
29.5
2720
Male, age 74, both hemispheres
28.8
2317
Female, age 72, unknown
26.4
Medial parabrachial nucleus nTPM: 23.3
2170
Female, age 91, both hemispheres
26.8
2463
Female, age 85, right hemisphere
23.8
2156
Male, age 61, both hemispheres
22.5
2854
Male, age 80, both hemispheres
22.1
2786
Male, age 76, both hemispheres
21.1
Medial periolivary nuclei nTPM: 23.2
2063
Male, age 76, both hemispheres
35.8
2171
Female, age 85, both hemispheres
28.8
2791
Male, age 74, right hemisphere
21.4
2458
Female, age 91, both hemispheres
15.8
2081
Male, age 80, both hemispheres
13.9
Motor facial nucleus nTPM: 23.5
2062
Male, age 76, both hemispheres
36.9
2327
Male, age 80, both hemispheres
24.3
2365
Male, age 74, right hemisphere
22.8
2126
Male, age 61, both hemispheres
20.6
2697
Female, age 85, both hemispheres
20.3
2795
Female, age 91, both hemispheres
16.4
Motor trigeminal nucleus nTPM: 22.0
2079
Male, age 80, both hemispheres
27.8
2335
Male, age 61, both hemispheres
27.0
2309
Male, age 76, both hemispheres
23.7
2560
Male, age 74, both hemispheres
16.6
2321
Female, age 91, both hemispheres
14.9
Nuclei of the trapezoid body nTPM: 29.1
2159
Male, age 61, both hemispheres
39.8
1983
Male, age 76, both hemispheres
34.9
2735
Female, age 85, both hemispheres
33.0
2166
Male, age 80, both hemispheres
21.2
2368
Female, age 91, both hemispheres
16.7
Nucleus raphe magnus nTPM: 29.2
2160
Male, age 61, both hemispheres
44.1
2172
Female, age 85, both hemispheres
33.2
2455
Male, age 74, both hemispheres
31.1
2051
Male, age 76, both hemispheres
24.4
2328
Male, age 80, both hemispheres
24.4
2459
Female, age 91, both hemispheres
18.3
Paramedian reticular nucleus nTPM: 25.1
2050
Female, age 85, both hemispheres
32.1
2313
Male, age 61, both hemispheres
29.8
2057
Male, age 80, both hemispheres
23.5
2052
Male, age 76, both hemispheres
14.8
Pedunculopontine tegmental nucleus nTPM: 23.3
1921
Female, age 85, both hemispheres
30.0
2334
Male, age 80, both hemispheres
22.0
2338
Male, age 61, both hemispheres
18.0
Pontine nuclei nTPM: 26.2
2727
Male, age 61, right hemisphere
37.6
2787
Female, age 85, both hemispheres
35.5
2109
Female, age 72, unknown
30.3
1863
Male, age 55, unknown
29.0
1968
Male, age 76, left hemisphere
26.5
2454
Male, age 74, left hemisphere
20.5
2115
Male, age 80, left hemisphere
16.1
2319
Female, age 91, both hemispheres
14.2
Pontine raphe nucleus nTPM: 30.5
2853
Male, age 76, midline
30.6
2122
Female, age 85, midline
30.3
Posteroventral cochlear nucleus nTPM: 17.5
2752
Female, age 85, both hemispheres
30.3
2070
Male, age 76, both hemispheres
27.4
2371
Male, age 61, both hemispheres
17.0
2341
Male, age 80, both hemispheres
6.7
2135
Female, age 91, both hemispheres
5.9
Principal sensory trigeminal nucleus nTPM: 26.1
2158
Male, age 61, both hemispheres
42.5
2008
Male, age 80, left hemisphere
30.7
2324
Male, age 76, both hemispheres
18.0
2367
Female, age 91, left hemisphere
13.4
Reticular pontine nucleus, caudal nTPM: 22.6
2332
Male, age 80, right hemisphere
28.3
2092
Male, age 76, both hemispheres
27.0
2457
Female, age 91, both hemispheres
17.9
2559
Male, age 74, both hemispheres
17.1
Reticular pontine nucleus, oral nTPM: 19.7
2012
Female, age 85, both hemispheres
29.6
2167
Male, age 76, both hemispheres
24.0
1939
Male, age 80, both hemispheres
20.2
2366
Female, age 91, both hemispheres
14.3
2361
Male, age 74, both hemispheres
10.2
Reticulotegmental nucleus nTPM: 20.9
2325
Male, age 76, both hemispheres
28.4
2322
Female, age 91, both hemispheres
19.8
2333
Male, age 80, both hemispheres
19.4
2452
Male, age 74, both hemispheres
16.1
Spinal trigeminal nucleus, oral nTPM: 25.2
2737
Female, age 85, both hemispheres
29.4
1978
Male, age 76, both hemispheres
24.8
2164
Male, age 80, both hemispheres
21.3
Subcoeruleus area nTPM: 25.2
2323
Female, age 91, left hemisphere
35.6
1958
Male, age 80, both hemispheres
32.6
2089
Male, age 76, left hemisphere
22.0
2451
Male, age 74, both hemispheres
19.3
2369
Female, age 85, left hemisphere
16.7
Superior olive nTPM: 24.4
1875
Female, age 85, both hemispheres
32.3
2020
Male, age 76, both hemispheres
26.2
2364
Male, age 74, right hemisphere
23.0
2329
Male, age 80, right hemisphere
20.7
2561
Female, age 91, both hemispheres
19.7
Ventral periolivary nuclei nTPM: 26.5
2165
Male, age 80, both hemispheres
29.3
2130
Female, age 85, both hemispheres
28.5
2023
Male, age 76, both hemispheres
24.9
2794
Female, age 91, left hemisphere
23.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 19.7
1959
Male, age 76, both hemispheres
26.4
2449
Male, age 74, both hemispheres
21.5
2161
Male, age 80, both hemispheres
20.4
2840
Female, age 85, both hemispheres
20.4
2359
Male, age 61, both hemispheres
17.4
2456
Female, age 91, both hemispheres
12.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
