MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.6 nTPM
HPA Brain:72.5 nTPM
GTEx:132.6 nTPM
FANTOM5:138.7 Scaled Tags Per Million
Pig:82.2 nTPM
Mouse:117.7 nTPM
Allen mouse:1.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.7
2666 Male, age 74, left hemisphere 65.5
1870 Female, age 42, unknown 61.7
2828 Female, age 72, unknown 55.2
2019 Male, age 18, unknown 54.3
2586 Male, age 75, left hemisphere 53.5
1827 Male, age 72, unknown 49.2
1833 Male, age 53, unknown 47.2
2411 Female, age 72, unknown 46.5
1830 Male, age 51, unknown 44.8
2219 Male, age 76, both hemispheres 39.2
Dorsal raphe nucleus
nTPM: 56.1
2298 Female, age 72, unknown 63.4
2047 Male, age 72, unknown 62.0
1828 Male, age 53, unknown 55.8
2750 Male, age 76, both hemispheres 55.2
2016 Female, age 72, unknown 44.3
Inferior colliculus
nTPM: 54.1
2849 Male, age 72, unknown 59.3
1890 Male, age 53, unknown 54.6
1848 Female, age 42, unknown 52.3
2097 Female, age 72, unknown 50.3
Median raphe nucleus
nTPM: 72.5
2220 Male, age 76, midline 72.5
Periaquaductal grey, anterior
nTPM: 57.4
1947 Male, age 18, unknown 61.7
1795 Male, age 51, unknown 56.1
2502 Female, age 75, unknown 54.4
Periaquaductal grey, dorsal
nTPM: 51.7
2850 Male, age 76, both hemispheres 67.2
1840 Male, age 53, unknown 54.3
1831 Male, age 72, unknown 46.6
2464 Female, age 72, unknown 38.5
Periaquaductal grey, lateral
nTPM: 47.1
2272 Male, age 74, both hemispheres 50.0
2140 Male, age 76, both hemispheres 46.0
2053 Male, age 18, unknown 45.3
Pretectal area
nTPM: 59.1
1944 Female, age 72, unknown 77.1
2007 Male, age 72, unknown 71.5
1817 Female, age 42, unknown 69.5
2667 Female, age 75, unknown 68.0
1816 Male, age 51, unknown 63.1
1815 Male, age 53, unknown 59.5
2825 Male, age 18, unknown 53.2
2407 Male, age 75, both hemispheres 52.9
2224 Female, age 72, unknown 51.5
2273 Male, age 74, both hemispheres 47.0
2316 Male, age 76, right hemisphere 37.0
Red nucleus
nTPM: 58.4
1821 Female, age 72, unknown 70.1
2503 Female, age 72, unknown 64.3
1865 Male, age 51, unknown 63.5
2769 Male, age 72, unknown 62.7
2725 Female, age 75, unknown 61.9
2785 Male, age 18, unknown 59.3
2823 Male, age 76, right hemisphere 57.2
1954 Female, age 42, unknown 56.5
2227 Male, age 72, unknown 55.4
1904 Male, age 53, unknown 54.7
2584 Male, age 75, left hemisphere 52.0
2588 Male, age 74, left hemisphere 42.9
Substantia nigra
nTPM: 63.8
1916 Female, age 42, unknown 87.6
2665 Male, age 74, both hemispheres 75.1
1889 Female, age 72, unknown 73.9
1851 Male, age 51, unknown 72.4
2699 Male, age 18, unknown 69.1
1941 Male, age 53, unknown 69.0
2409 Female, age 72, unknown 53.1
2583 Male, age 75, right hemisphere 47.6
2241 Male, age 72, unknown 46.9
2590 Female, age 75, unknown 43.8
Superior colliculus
nTPM: 54.3
2587 Male, age 74, left hemisphere 66.0
2668 Female, age 75, unknown 64.4
1796 Male, age 53, unknown 60.6
1913 Female, age 42, unknown 55.9
2664 Male, age 75, both hemispheres 53.8
1995 Male, age 72, unknown 51.7
1839 Male, age 51, unknown 49.1
2087 Female, age 72, unknown 47.9
2261 Male, age 18, unknown 47.0
1895 Male, age 76, right hemisphere 46.5
Ventral tegmental area
nTPM: 59.2
1915 Female, age 42, unknown 68.5
2218 Male, age 76, both hemispheres 66.4
2410 Female, age 72, unknown 65.2
1942 Male, age 51, unknown 54.1
2223 Female, age 72, unknown 52.5
2021 Male, age 53, unknown 48.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 132.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.6
Samples: 139

Max nTPM: 275.9
Min nTPM: 63.8
Std nTPM: 31.9
Median nTPM: 128.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 275.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 256.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 210.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 208.3
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 199.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 191.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 190.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 187.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 185.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 185.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 183.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.7
FF:10158-103A5 76 years, female 138.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 80.5
Samples: 4

Max nTPM: 98.8
Min nTPM: 68.2
Sample A Female 98.8
Sample B Female 69.9
Sample C Male 85.1
Sample D Male 68.2
Midbrain
nTPM: 82.2
Samples: 4

Max nTPM: 111.4
Min nTPM: 65.8
Sample A Female 111.4
Sample B Female 77.4
Sample C Male 74.3
Sample D Male 65.8
Periaqueductal gray
nTPM: 68.9
Samples: 3

Max nTPM: 78.6
Min nTPM: 62.5
Sample B Female 62.5
Sample C Male 78.6
Sample D Male 65.5
Superior colliculi
nTPM: 78.4
Samples: 4

Max nTPM: 90.8
Min nTPM: 70.2
Sample A Female 90.8
Sample B Female 70.2
Sample C Male 79.3
Sample D Male 73.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.7
Samples: 4

Max nTPM: 135.3
Min nTPM: 105.7
Sample A Male 135.3
Sample B Male 109.2
Sample C Female 105.7
Sample D Female 120.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
68632631 Antisense, RP_050125_01_H10, Mouse strain C57BL/6J (56 days, male) 1.3

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