HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi 		23.520
RNA expressioni
Consensus:12.0 nTPM
HPA Brain:30.2 nTPM
GTEx:12.0 nTPM
FANTOM5:7.9 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:8.2 nTPM
Allen mouse:0.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041505Antibody HPA044066
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA041505
Hippocampal formation mean intensity 23.520
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 9.544
Molecular layer of the dentate gyrus 6.423
Granular dentate gyrus 23.520
CA1 - oriens layer 0.615
CA1 - pyramidal layer 15.300
CA1 - radiatum layer 9.527
CA2 - oriens layer 3.726
CA2 - pyramidal layer 16.205
CA2 - radiatum layer 8.235
CA3 - oriens layer 3.906
CA3 - pyramidal layer 8.620
CA3 - radiatum layer 10.217
Stratum lucidum 3.819
Lacunosum moleculare 2.193
Subiculum 14.864

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.2
Sample id Sample description nTPM
Hippocampus
nTPM: 24.6
2148 Female, age 91, left hemisphere 36.2
2621 Female, age 67, right hemisphere 27.2
1898 Male, age 80, left hemisphere 27.0
1855 Male, age 76, left hemisphere 24.1
1911 Female, age 85, right hemisphere 17.9
2529 Female, age 94, left hemisphere 15.3
Dentate gyrus
nTPM: 30.2
1927 Female, age 91, both hemispheres 48.2
2531 Female, age 67, both hemispheres 34.0
2530 Female, age 94, left hemisphere 29.4
2010 Male, age 76, both hemispheres 24.3
2528 Male, age 74, both hemispheres 23.1
2246 Female, age 85, both hemispheres 22.1
Entorhinal gyrus
nTPM: 21.3
2613 Female, age 94, left hemisphere 28.6
1938 Female, age 85, left hemisphere 25.0
2764 Male, age 80, right hemisphere 23.0
2686 Male, age 75, right hemisphere 19.9
1787 Male, age 76, left hemisphere 16.4
2117 Female, age 91, right hemisphere 14.7
Hippocampus, CA1
nTPM: 29.1
2749 Male, age 80, left hemisphere 39.7
2045 Male, age 76, both hemispheres 38.4
1873 Female, age 85, both hemispheres 31.7
2527 Male, age 74, both hemispheres 20.9
2082 Female, age 91, right hemisphere 14.9
Hippocampus, CA2
nTPM: 21.1
1963 Male, age 80, left hemisphere 37.0
1892 Male, age 76, both hemispheres 27.3
2437 Female, age 94, left hemisphere 20.0
2113 Female, age 91, right hemisphere 15.6
2249 Male, age 74, both hemispheres 15.4
1940 Female, age 85, left hemisphere 11.5
Hippocampus, CA3
nTPM: 26.8
2620 Female, age 94, left hemisphere 37.9
2861 Female, age 67, both hemispheres 36.5
2137 Male, age 80, left hemisphere 27.1
1867 Male, age 76, both hemispheres 21.4
1891 Female, age 85, both hemispheres 20.4
2436 Male, age 74, both hemispheres 17.3
Parahippocampal cortex
nTPM: 17.3
1933 Female, age 85, both hemispheres 21.5
2250 Female, age 67, right hemisphere 20.5
2693 Female, age 94, both hemispheres 20.5
1990 Female, age 91, right hemisphere 18.3
1850 Male, age 80, both hemispheres 17.9
2245 Female, age 91, both hemispheres 16.7
2622 Female, age 67, right hemisphere 15.0
2692 Male, age 74, both hemispheres 14.7
2018 Male, age 76, both hemispheres 14.6
2532 Female, age 72, left hemisphere 13.8
Perirhinal gyrus
nTPM: 20.3
1847 Female, age 91, left hemisphere 29.7
2521 Female, age 94, right hemisphere 21.1
1841 Female, age 85, right hemisphere 18.0
1794 Male, age 80, right hemisphere 17.8
2848 Male, age 76, right hemisphere 14.8
Subiculum
nTPM: 17.0
1977 Female, age 85, both hemispheres 22.5
2729 Female, age 91, right hemisphere 20.0
1901 Male, age 80, both hemispheres 16.6
2619 Male, age 74, both hemispheres 15.2
2438 Female, age 94, left hemisphere 14.7
2042 Male, age 76, both hemispheres 13.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.0
Samples: 197

Max nTPM: 53.5
Min nTPM: 0.1
Std nTPM: 8.9
Median nTPM: 10.0
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 53.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 46.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 44.5
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 37.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 37.5
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 33.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 31.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 30.8
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 29.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 29.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 27.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 7.9
FF:10169-103B7 60 years, female 11.4
FF:10153-102I9 76 years, female 4.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Subiculum
nTPM: 10.7
Samples: 4

Max nTPM: 15.1
Min nTPM: 7.6
Sample A Female 15.1
Sample B Female 9.8
Sample C Male 10.2
Sample D Male 7.6
Dorsal hippocampus
nTPM: 16.1
Samples: 4

Max nTPM: 19.6
Min nTPM: 13.4
Sample A Female 19.6
Sample B Female 17.9
Sample C Male 13.4
Sample D Male 13.5
Entorhinal cortex
nTPM: 12.9
Samples: 4

Max nTPM: 14.9
Min nTPM: 11.6
Sample A Female 14.9
Sample B Female 12.6
Sample C Male 11.6
Sample D Male 12.5
Ventral hippocampus
nTPM: 16.1
Samples: 4

Max nTPM: 20.1
Min nTPM: 12.3
Sample A Female 20.1
Sample B Female 12.3
Sample C Male 17.3
Sample D Male 14.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 10.3
Min nTPM: 6.6
Sample A Male 7.3
Sample B Male 6.6
Sample C Female 10.3
Sample D Female 8.4
Hippocampal formation
nTPM: 7.5
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.8
Sample A Male 7.8
Sample B Male 8.4
Sample C Female 7.0
Sample D Female 6.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
69873845 Antisense, RP_050512_02_B04, Mouse strain C57BL/6J (56 days, male) 0.5

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