MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:19.8 nTPM
HPA Brain:76.5 nTPM
GTEx:19.8 nTPM
FANTOM5:78.2 Scaled Tags Per Million
Pig:24.6 nTPM
Mouse:18.9 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.1
1830 Male, age 51, unknown 79.3
1833 Male, age 53, unknown 78.1
2666 Male, age 74, left hemisphere 77.6
1870 Female, age 42, unknown 74.5
2219 Male, age 76, both hemispheres 68.5
2411 Female, age 72, unknown 67.2
2019 Male, age 18, unknown 61.9
1827 Male, age 72, unknown 61.2
2828 Female, age 72, unknown 58.2
2586 Male, age 75, left hemisphere 54.4
Dorsal raphe nucleus
nTPM: 62.7
2016 Female, age 72, unknown 70.3
2750 Male, age 76, both hemispheres 69.0
2047 Male, age 72, unknown 62.9
1828 Male, age 53, unknown 60.5
2298 Female, age 72, unknown 50.7
Inferior colliculus
nTPM: 69.1
2849 Male, age 72, unknown 72.7
2097 Female, age 72, unknown 72.6
1890 Male, age 53, unknown 68.6
1848 Female, age 42, unknown 62.5
Median raphe nucleus
nTPM: 65.6
2220 Male, age 76, midline 65.6
Periaquaductal grey, anterior
nTPM: 59.2
2502 Female, age 75, unknown 67.1
1947 Male, age 18, unknown 62.6
1795 Male, age 51, unknown 47.9
Periaquaductal grey, dorsal
nTPM: 67.5
1831 Male, age 72, unknown 73.2
2464 Female, age 72, unknown 68.8
2850 Male, age 76, both hemispheres 67.3
1840 Male, age 53, unknown 60.7
Periaquaductal grey, lateral
nTPM: 55.6
2053 Male, age 18, unknown 60.2
2140 Male, age 76, both hemispheres 55.0
2272 Male, age 74, both hemispheres 51.6
Pretectal area
nTPM: 60.9
2316 Male, age 76, right hemisphere 70.6
1815 Male, age 53, unknown 70.3
2825 Male, age 18, unknown 69.3
2407 Male, age 75, both hemispheres 62.6
2224 Female, age 72, unknown 61.7
1816 Male, age 51, unknown 58.3
1817 Female, age 42, unknown 57.9
2007 Male, age 72, unknown 56.4
1944 Female, age 72, unknown 56.3
2273 Male, age 74, both hemispheres 53.5
2667 Female, age 75, unknown 53.0
Red nucleus
nTPM: 76.5
2823 Male, age 76, right hemisphere 89.4
2503 Female, age 72, unknown 89.1
1904 Male, age 53, unknown 83.8
2725 Female, age 75, unknown 83.4
1954 Female, age 42, unknown 78.9
1865 Male, age 51, unknown 78.3
1821 Female, age 72, unknown 77.9
2588 Male, age 74, left hemisphere 74.2
2227 Male, age 72, unknown 71.6
2584 Male, age 75, left hemisphere 66.7
2785 Male, age 18, unknown 64.5
2769 Male, age 72, unknown 60.7
Substantia nigra
nTPM: 64.8
2241 Male, age 72, unknown 78.7
2699 Male, age 18, unknown 72.8
2583 Male, age 75, right hemisphere 69.9
1889 Female, age 72, unknown 67.4
2665 Male, age 74, both hemispheres 65.9
1941 Male, age 53, unknown 62.0
1851 Male, age 51, unknown 61.8
2409 Female, age 72, unknown 59.2
2590 Female, age 75, unknown 55.9
1916 Female, age 42, unknown 54.3
Superior colliculus
nTPM: 67.2
2587 Male, age 74, left hemisphere 76.3
1895 Male, age 76, right hemisphere 76.2
1995 Male, age 72, unknown 74.4
1839 Male, age 51, unknown 72.2
1913 Female, age 42, unknown 70.6
2668 Female, age 75, unknown 69.8
2664 Male, age 75, both hemispheres 60.5
2087 Female, age 72, unknown 60.3
2261 Male, age 18, unknown 57.3
1796 Male, age 53, unknown 54.3
Ventral tegmental area
nTPM: 64.4
2218 Male, age 76, both hemispheres 68.7
2223 Female, age 72, unknown 68.3
1942 Male, age 51, unknown 65.0
2410 Female, age 72, unknown 64.3
2021 Male, age 53, unknown 63.6
1915 Female, age 42, unknown 56.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.8
Samples: 139

Max nTPM: 43.8
Min nTPM: 6.8
Std nTPM: 6.8
Median nTPM: 18.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 43.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 36.4
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 35.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 34.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 33.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 33.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 33.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 31.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 31.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 31.4
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 31.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.2
FF:10158-103A5 76 years, female 78.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 22.8
Sample A Female 22.8
Sample B Female 24.1
Sample C Male 23.3
Sample D Male 23.1
Midbrain
nTPM: 24.6
Samples: 4

Max nTPM: 28.5
Min nTPM: 22.8
Sample A Female 28.5
Sample B Female 24.3
Sample C Male 22.8
Sample D Male 22.8
Periaqueductal gray
nTPM: 22.7
Samples: 3

Max nTPM: 23.3
Min nTPM: 21.7
Sample B Female 23.3
Sample C Male 21.7
Sample D Male 23.0
Superior colliculi
nTPM: 21.9
Samples: 4

Max nTPM: 22.8
Min nTPM: 20.9
Sample A Female 20.9
Sample B Female 22.8
Sample C Male 22.2
Sample D Male 21.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 20.8
Min nTPM: 17.1
Sample A Male 17.1
Sample B Male 20.8
Sample C Female 19.7
Sample D Female 18.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
70429178 Antisense, RP_050614_01_B08, Mouse strain C57BL/6J (56 days, male) 1.4

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