MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:16.0 nTPM
HPA Brain:48.8 nTPM
GTEx:16.0 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:51.7 nTPM
Mouse:23.9 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.8
2586 Male, age 75, left hemisphere 60.6
2666 Male, age 74, left hemisphere 46.1
2219 Male, age 76, both hemispheres 44.9
2828 Female, age 72, unknown 44.3
2411 Female, age 72, unknown 43.4
1827 Male, age 72, unknown 42.4
2019 Male, age 18, unknown 37.5
1833 Male, age 53, unknown 37.1
1870 Female, age 42, unknown 36.4
1830 Male, age 51, unknown 35.7
Dorsal raphe nucleus
nTPM: 38.6
2298 Female, age 72, unknown 44.4
2047 Male, age 72, unknown 42.3
2750 Male, age 76, both hemispheres 38.9
2016 Female, age 72, unknown 34.7
1828 Male, age 53, unknown 32.9
Inferior colliculus
nTPM: 34.8
2097 Female, age 72, unknown 37.8
2849 Male, age 72, unknown 36.2
1848 Female, age 42, unknown 35.1
1890 Male, age 53, unknown 30.0
Median raphe nucleus
nTPM: 42.3
2220 Male, age 76, midline 42.3
Periaquaductal grey, anterior
nTPM: 48.8
1795 Male, age 51, unknown 50.5
2502 Female, age 75, unknown 50.4
1947 Male, age 18, unknown 45.6
Periaquaductal grey, dorsal
nTPM: 38.9
1840 Male, age 53, unknown 44.4
2464 Female, age 72, unknown 41.5
1831 Male, age 72, unknown 37.6
2850 Male, age 76, both hemispheres 32.2
Periaquaductal grey, lateral
nTPM: 36.5
2053 Male, age 18, unknown 39.7
2140 Male, age 76, both hemispheres 36.0
2272 Male, age 74, both hemispheres 34.0
Pretectal area
nTPM: 43.5
2007 Male, age 72, unknown 50.4
1816 Male, age 51, unknown 50.2
2407 Male, age 75, both hemispheres 46.6
1944 Female, age 72, unknown 46.5
1817 Female, age 42, unknown 45.4
2224 Female, age 72, unknown 45.0
1815 Male, age 53, unknown 44.3
2825 Male, age 18, unknown 43.8
2667 Female, age 75, unknown 37.7
2316 Male, age 76, right hemisphere 37.0
2273 Male, age 74, both hemispheres 32.2
Red nucleus
nTPM: 35.7
2584 Male, age 75, left hemisphere 46.3
2785 Male, age 18, unknown 41.8
2588 Male, age 74, left hemisphere 40.0
2769 Male, age 72, unknown 35.7
1904 Male, age 53, unknown 35.2
2227 Male, age 72, unknown 34.2
1954 Female, age 42, unknown 34.1
2503 Female, age 72, unknown 33.8
2725 Female, age 75, unknown 33.3
1821 Female, age 72, unknown 31.8
1865 Male, age 51, unknown 31.5
2823 Male, age 76, right hemisphere 30.5
Substantia nigra
nTPM: 40.6
1941 Male, age 53, unknown 47.3
2665 Male, age 74, both hemispheres 46.6
1916 Female, age 42, unknown 46.0
1851 Male, age 51, unknown 43.0
1889 Female, age 72, unknown 41.2
2583 Male, age 75, right hemisphere 41.0
2590 Female, age 75, unknown 39.3
2699 Male, age 18, unknown 36.2
2241 Male, age 72, unknown 35.7
2409 Female, age 72, unknown 30.1
Superior colliculus
nTPM: 42.6
2664 Male, age 75, both hemispheres 54.6
2668 Female, age 75, unknown 51.0
1796 Male, age 53, unknown 46.4
2087 Female, age 72, unknown 45.2
2261 Male, age 18, unknown 43.5
1839 Male, age 51, unknown 40.8
1913 Female, age 42, unknown 37.4
1995 Male, age 72, unknown 37.3
2587 Male, age 74, left hemisphere 36.4
1895 Male, age 76, right hemisphere 33.6
Ventral tegmental area
nTPM: 39.9
1915 Female, age 42, unknown 42.9
1942 Male, age 51, unknown 42.6
2410 Female, age 72, unknown 42.5
2218 Male, age 76, both hemispheres 40.6
2021 Male, age 53, unknown 40.2
2223 Female, age 72, unknown 30.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.0
Samples: 139

Max nTPM: 28.1
Min nTPM: 9.5
Std nTPM: 3.5
Median nTPM: 15.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 28.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 27.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 24.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 22.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 22.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 22.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 22.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 21.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 21.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 21.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.2
FF:10158-103A5 76 years, female 29.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.4
Samples: 4

Max nTPM: 56.4
Min nTPM: 34.2
Sample A Female 56.4
Sample B Female 34.2
Sample C Male 48.9
Sample D Male 42.0
Midbrain
nTPM: 51.7
Samples: 4

Max nTPM: 65.1
Min nTPM: 38.1
Sample A Female 65.1
Sample B Female 38.1
Sample C Male 55.9
Sample D Male 47.7
Periaqueductal gray
nTPM: 35.8
Samples: 3

Max nTPM: 40.2
Min nTPM: 33.0
Sample B Female 34.1
Sample C Male 40.2
Sample D Male 33.0
Superior colliculi
nTPM: 46.8
Samples: 4

Max nTPM: 52.4
Min nTPM: 32.9
Sample A Female 52.4
Sample B Female 32.9
Sample C Male 51.8
Sample D Male 50.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 26.1
Min nTPM: 20.8
Sample A Male 26.1
Sample B Male 20.8
Sample C Female 23.7
Sample D Female 24.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
323178 Antisense, RP_040617_02_B02, Mouse strain C57BL/6J (56 days, male) 5.8

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