HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:35.8 nTPM
HPA Brain:42.0 nTPM
GTEx:35.8 nTPM
FANTOM5:49.8 Scaled Tags Per Million
Pig:29.3 nTPM
Mouse:44.9 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA051261
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.0
Sample id Sample description nTPM
Hippocampus
nTPM: 40.4
1898 Male, age 80, left hemisphere 47.9
2148 Female, age 91, left hemisphere 42.0
2621 Female, age 67, right hemisphere 41.8
2529 Female, age 94, left hemisphere 39.5
1855 Male, age 76, left hemisphere 37.5
1911 Female, age 85, right hemisphere 33.9
Dentate gyrus
nTPM: 40.9
2530 Female, age 94, left hemisphere 53.5
2010 Male, age 76, both hemispheres 40.6
2246 Female, age 85, both hemispheres 38.6
2531 Female, age 67, both hemispheres 38.4
1927 Female, age 91, both hemispheres 38.1
2528 Male, age 74, both hemispheres 36.2
Entorhinal gyrus
nTPM: 40.2
2764 Male, age 80, right hemisphere 46.5
1787 Male, age 76, left hemisphere 42.5
2613 Female, age 94, left hemisphere 42.4
2117 Female, age 91, right hemisphere 39.7
2686 Male, age 75, right hemisphere 36.0
1938 Female, age 85, left hemisphere 34.1
Hippocampus, CA1
nTPM: 40.9
2749 Male, age 80, left hemisphere 55.5
2527 Male, age 74, both hemispheres 44.0
2045 Male, age 76, both hemispheres 35.2
2082 Female, age 91, right hemisphere 35.1
1873 Female, age 85, both hemispheres 34.6
Hippocampus, CA2
nTPM: 41.3
1892 Male, age 76, both hemispheres 46.3
2437 Female, age 94, left hemisphere 46.2
1963 Male, age 80, left hemisphere 42.4
2249 Male, age 74, both hemispheres 38.5
1940 Female, age 85, left hemisphere 37.8
2113 Female, age 91, right hemisphere 36.6
Hippocampus, CA3
nTPM: 42.0
2620 Female, age 94, left hemisphere 45.4
2861 Female, age 67, both hemispheres 44.2
2436 Male, age 74, both hemispheres 44.1
2137 Male, age 80, left hemisphere 43.2
1867 Male, age 76, both hemispheres 40.9
1891 Female, age 85, both hemispheres 34.1
Parahippocampal cortex
nTPM: 39.6
2245 Female, age 91, both hemispheres 47.8
2532 Female, age 72, left hemisphere 44.6
2250 Female, age 67, right hemisphere 43.1
2622 Female, age 67, right hemisphere 41.0
1990 Female, age 91, right hemisphere 40.0
1850 Male, age 80, both hemispheres 39.2
2692 Male, age 74, both hemispheres 38.9
1933 Female, age 85, both hemispheres 36.6
2693 Female, age 94, both hemispheres 33.4
2018 Male, age 76, both hemispheres 31.9
Perirhinal gyrus
nTPM: 41.3
1794 Male, age 80, right hemisphere 47.9
1847 Female, age 91, left hemisphere 46.2
2521 Female, age 94, right hemisphere 38.7
1841 Female, age 85, right hemisphere 37.5
2848 Male, age 76, right hemisphere 35.9
Subiculum
nTPM: 39.5
2619 Male, age 74, both hemispheres 44.0
1901 Male, age 80, both hemispheres 43.5
2438 Female, age 94, left hemisphere 40.8
1977 Female, age 85, both hemispheres 40.5
2729 Female, age 91, right hemisphere 35.4
2042 Male, age 76, both hemispheres 33.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.8
Samples: 197

Max nTPM: 57.6
Min nTPM: 16.2
Std nTPM: 8.1
Median nTPM: 34.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 57.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 57.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 55.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 54.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 54.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 54.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 53.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 52.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 52.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 51.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 51.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.8
FF:10169-103B7 60 years, female 58.1
FF:10153-102I9 76 years, female 41.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.3
Pig sample Sample description nTPM
Subiculum
nTPM: 24.6
Samples: 4

Max nTPM: 26.8
Min nTPM: 21.5
Sample A Female 26.8
Sample B Female 26.7
Sample C Male 21.5
Sample D Male 23.3
Dorsal hippocampus
nTPM: 29.3
Samples: 4

Max nTPM: 35.4
Min nTPM: 24.9
Sample A Female 35.4
Sample B Female 29.9
Sample C Male 27.0
Sample D Male 24.9
Entorhinal cortex
nTPM: 26.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 24.1
Sample A Female 24.1
Sample B Female 26.3
Sample C Male 28.1
Sample D Male 27.0
Ventral hippocampus
nTPM: 27.1
Samples: 4

Max nTPM: 34.0
Min nTPM: 20.4
Sample A Female 24.7
Sample B Female 20.4
Sample C Male 29.2
Sample D Male 34.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 44.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.7
Samples: 4

Max nTPM: 42.5
Min nTPM: 37.3
Sample A Male 40.0
Sample B Male 39.1
Sample C Female 42.5
Sample D Female 37.3
Hippocampal formation
nTPM: 44.9
Samples: 4

Max nTPM: 45.6
Min nTPM: 44.4
Sample A Male 45.2
Sample B Male 44.4
Sample C Female 45.6
Sample D Female 44.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
68845765 Antisense, RP_050224_02_E02, Mouse strain C57BL/6J (56 days, male) 6.1

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