MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:36.0 nTPM
HPA Brain:42.5 nTPM
GTEx:36.0 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:34.1 nTPM
Allen mouse:5.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.9
2586 Male, age 75, left hemisphere 50.7
2019 Male, age 18, unknown 44.2
1827 Male, age 72, unknown 41.5
2219 Male, age 76, both hemispheres 38.3
2666 Male, age 74, left hemisphere 38.1
2828 Female, age 72, unknown 38.1
1870 Female, age 42, unknown 35.2
2411 Female, age 72, unknown 34.7
1833 Male, age 53, unknown 34.5
1830 Male, age 51, unknown 33.8
Dorsal raphe nucleus
nTPM: 37.8
2298 Female, age 72, unknown 41.0
2047 Male, age 72, unknown 39.7
1828 Male, age 53, unknown 39.2
2750 Male, age 76, both hemispheres 38.0
2016 Female, age 72, unknown 31.1
Inferior colliculus
nTPM: 38.3
2849 Male, age 72, unknown 39.4
2097 Female, age 72, unknown 38.4
1848 Female, age 42, unknown 38.2
1890 Male, age 53, unknown 37.3
Median raphe nucleus
nTPM: 42.5
2220 Male, age 76, midline 42.5
Periaquaductal grey, anterior
nTPM: 39.4
1795 Male, age 51, unknown 41.6
1947 Male, age 18, unknown 40.4
2502 Female, age 75, unknown 36.3
Periaquaductal grey, dorsal
nTPM: 32.7
2850 Male, age 76, both hemispheres 38.0
1840 Male, age 53, unknown 32.2
1831 Male, age 72, unknown 31.2
2464 Female, age 72, unknown 29.2
Periaquaductal grey, lateral
nTPM: 33.9
2272 Male, age 74, both hemispheres 37.7
2140 Male, age 76, both hemispheres 32.5
2053 Male, age 18, unknown 31.4
Pretectal area
nTPM: 42.2
2007 Male, age 72, unknown 52.5
1817 Female, age 42, unknown 48.4
1816 Male, age 51, unknown 48.3
1944 Female, age 72, unknown 46.5
2667 Female, age 75, unknown 44.8
1815 Male, age 53, unknown 41.9
2273 Male, age 74, both hemispheres 38.1
2407 Male, age 75, both hemispheres 37.9
2224 Female, age 72, unknown 36.4
2825 Male, age 18, unknown 35.1
2316 Male, age 76, right hemisphere 34.1
Red nucleus
nTPM: 37.7
2785 Male, age 18, unknown 45.8
2725 Female, age 75, unknown 42.8
2769 Male, age 72, unknown 38.4
1865 Male, age 51, unknown 38.2
2584 Male, age 75, left hemisphere 37.9
2227 Male, age 72, unknown 37.8
1821 Female, age 72, unknown 37.4
1954 Female, age 42, unknown 36.5
2503 Female, age 72, unknown 36.3
2823 Male, age 76, right hemisphere 35.0
1904 Male, age 53, unknown 34.7
2588 Male, age 74, left hemisphere 31.8
Substantia nigra
nTPM: 40.8
1916 Female, age 42, unknown 54.7
1941 Male, age 53, unknown 48.4
2665 Male, age 74, both hemispheres 43.9
1889 Female, age 72, unknown 43.1
1851 Male, age 51, unknown 42.2
2699 Male, age 18, unknown 37.7
2583 Male, age 75, right hemisphere 37.3
2409 Female, age 72, unknown 35.5
2590 Female, age 75, unknown 33.7
2241 Male, age 72, unknown 32.1
Superior colliculus
nTPM: 37.5
1796 Male, age 53, unknown 45.9
2087 Female, age 72, unknown 41.9
2668 Female, age 75, unknown 39.7
2664 Male, age 75, both hemispheres 37.8
1895 Male, age 76, right hemisphere 36.5
2587 Male, age 74, left hemisphere 35.8
2261 Male, age 18, unknown 35.7
1839 Male, age 51, unknown 34.7
1913 Female, age 42, unknown 34.6
1995 Male, age 72, unknown 32.4
Ventral tegmental area
nTPM: 38.2
2218 Male, age 76, both hemispheres 43.2
1915 Female, age 42, unknown 41.7
2410 Female, age 72, unknown 40.9
2223 Female, age 72, unknown 36.9
1942 Male, age 51, unknown 35.9
2021 Male, age 53, unknown 30.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.0
Samples: 139

Max nTPM: 65.3
Min nTPM: 15.3
Std nTPM: 8.2
Median nTPM: 35.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 65.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 62.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 57.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 54.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 51.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 51.4
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 48.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 47.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 47.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.8
FF:10158-103A5 76 years, female 35.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.4
Samples: 4

Max nTPM: 28.5
Min nTPM: 18.8
Sample A Female 28.5
Sample B Female 22.3
Sample C Male 24.0
Sample D Male 18.8
Midbrain
nTPM: 26.1
Samples: 4

Max nTPM: 28.4
Min nTPM: 22.6
Sample A Female 28.4
Sample B Female 22.6
Sample C Male 26.4
Sample D Male 27.0
Periaqueductal gray
nTPM: 20.5
Samples: 3

Max nTPM: 22.7
Min nTPM: 18.5
Sample B Female 20.3
Sample C Male 22.7
Sample D Male 18.5
Superior colliculi
nTPM: 27.1
Samples: 4

Max nTPM: 33.2
Min nTPM: 21.0
Sample A Female 33.2
Sample B Female 21.0
Sample C Male 28.8
Sample D Male 25.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 36.4
Min nTPM: 32.9
Sample A Male 36.4
Sample B Male 33.6
Sample C Female 32.9
Sample D Female 33.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.4
68845765 Antisense, RP_050224_02_E02, Mouse strain C57BL/6J (56 days, male) 5.4

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