HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:129.3 nTPM
HPA Brain:62.7 nTPM
GTEx:129.3 nTPM
FANTOM5:17.4 Scaled Tags Per Million
Pig:32.6 nTPM
Mouse:7.0 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA018999
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Hippocampus
nTPM: 62.7
2529 Female, age 94, left hemisphere 80.2
2148 Female, age 91, left hemisphere 66.7
2621 Female, age 67, right hemisphere 61.9
1898 Male, age 80, left hemisphere 61.0
1911 Female, age 85, right hemisphere 56.5
1855 Male, age 76, left hemisphere 49.8
Dentate gyrus
nTPM: 60.4
2530 Female, age 94, left hemisphere 86.4
2531 Female, age 67, both hemispheres 73.7
2010 Male, age 76, both hemispheres 58.3
1927 Female, age 91, both hemispheres 49.4
2528 Male, age 74, both hemispheres 47.5
2246 Female, age 85, both hemispheres 47.1
Entorhinal gyrus
nTPM: 62.4
2117 Female, age 91, right hemisphere 85.1
2686 Male, age 75, right hemisphere 78.0
2764 Male, age 80, right hemisphere 61.0
1787 Male, age 76, left hemisphere 54.7
1938 Female, age 85, left hemisphere 49.5
2613 Female, age 94, left hemisphere 46.3
Hippocampus, CA1
nTPM: 52.7
2045 Male, age 76, both hemispheres 57.2
1873 Female, age 85, both hemispheres 56.1
2527 Male, age 74, both hemispheres 53.8
2082 Female, age 91, right hemisphere 50.9
2749 Male, age 80, left hemisphere 45.5
Hippocampus, CA2
nTPM: 54.6
2437 Female, age 94, left hemisphere 68.3
1940 Female, age 85, left hemisphere 62.4
1963 Male, age 80, left hemisphere 58.7
2113 Female, age 91, right hemisphere 52.3
1892 Male, age 76, both hemispheres 51.4
2249 Male, age 74, both hemispheres 34.6
Hippocampus, CA3
nTPM: 57.2
2861 Female, age 67, both hemispheres 86.1
1867 Male, age 76, both hemispheres 61.7
1891 Female, age 85, both hemispheres 54.8
2620 Female, age 94, left hemisphere 52.2
2436 Male, age 74, both hemispheres 46.0
2137 Male, age 80, left hemisphere 42.6
Parahippocampal cortex
nTPM: 49.3
2018 Male, age 76, both hemispheres 64.1
2245 Female, age 91, both hemispheres 57.8
2692 Male, age 74, both hemispheres 53.3
2622 Female, age 67, right hemisphere 50.5
1990 Female, age 91, right hemisphere 50.4
2532 Female, age 72, left hemisphere 47.4
1850 Male, age 80, both hemispheres 45.7
1933 Female, age 85, both hemispheres 42.9
2250 Female, age 67, right hemisphere 41.8
2693 Female, age 94, both hemispheres 39.0
Perirhinal gyrus
nTPM: 43.9
1841 Female, age 85, right hemisphere 48.3
1794 Male, age 80, right hemisphere 48.0
2848 Male, age 76, right hemisphere 42.5
2521 Female, age 94, right hemisphere 40.7
1847 Female, age 91, left hemisphere 39.8
Subiculum
nTPM: 55.4
2042 Male, age 76, both hemispheres 65.7
2438 Female, age 94, left hemisphere 60.6
1901 Male, age 80, both hemispheres 54.0
2729 Female, age 91, right hemisphere 52.6
1977 Female, age 85, both hemispheres 50.1
2619 Male, age 74, both hemispheres 49.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 129.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 129.3
Samples: 197

Max nTPM: 395.1
Min nTPM: 48.4
Std nTPM: 48.6
Median nTPM: 119.9
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 395.1
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 381.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 290.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 256.6
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 235.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 219.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 219.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 218.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 215.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 214.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 206.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 17.4
FF:10153-102I9 76 years, female 21.3
FF:10169-103B7 60 years, female 13.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 32.6
Pig sample Sample description nTPM
Subiculum
nTPM: 26.3
Samples: 4

Max nTPM: 35.7
Min nTPM: 21.2
Sample A Female 35.7
Sample B Female 24.7
Sample C Male 21.2
Sample D Male 23.4
Dorsal hippocampus
nTPM: 32.6
Samples: 4

Max nTPM: 42.6
Min nTPM: 24.9
Sample A Female 42.6
Sample B Female 28.2
Sample C Male 34.5
Sample D Male 24.9
Entorhinal cortex
nTPM: 24.6
Samples: 4

Max nTPM: 29.8
Min nTPM: 18.6
Sample A Female 21.7
Sample B Female 29.8
Sample C Male 28.3
Sample D Male 18.6
Ventral hippocampus
nTPM: 29.2
Samples: 4

Max nTPM: 39.2
Min nTPM: 23.3
Sample A Female 27.7
Sample B Female 23.3
Sample C Male 39.2
Sample D Male 26.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 7.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 7.0
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.4
Sample A Male 7.5
Sample B Male 7.2
Sample C Female 7.0
Sample D Female 6.4
Hippocampal formation
nTPM: 6.4
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.4
Sample A Male 6.6
Sample B Male 5.4
Sample C Female 6.5
Sample D Female 7.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
68193067 Antisense, RP_040914_01_D05, Mouse strain C57BL/6J (56 days, male) 3.8

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