MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:115.0 nTPM
HPA Brain:87.4 nTPM
GTEx:115.0 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:68.3 nTPM
Mouse:36.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.9
2586 Male, age 75, left hemisphere 100.3
1827 Male, age 72, unknown 84.1
2828 Female, age 72, unknown 78.9
2411 Female, age 72, unknown 75.3
1870 Female, age 42, unknown 73.1
2019 Male, age 18, unknown 72.4
1833 Male, age 53, unknown 71.2
2666 Male, age 74, left hemisphere 70.7
1830 Male, age 51, unknown 63.1
2219 Male, age 76, both hemispheres 60.4
Dorsal raphe nucleus
nTPM: 85.6
2298 Female, age 72, unknown 100.5
2047 Male, age 72, unknown 97.3
2750 Male, age 76, both hemispheres 81.3
1828 Male, age 53, unknown 78.2
2016 Female, age 72, unknown 70.8
Inferior colliculus
nTPM: 69.0
2097 Female, age 72, unknown 80.3
1890 Male, age 53, unknown 70.2
1848 Female, age 42, unknown 64.0
2849 Male, age 72, unknown 61.4
Median raphe nucleus
nTPM: 85.7
2220 Male, age 76, midline 85.7
Periaquaductal grey, anterior
nTPM: 87.4
1947 Male, age 18, unknown 100.9
1795 Male, age 51, unknown 85.8
2502 Female, age 75, unknown 75.4
Periaquaductal grey, dorsal
nTPM: 65.0
2850 Male, age 76, both hemispheres 72.0
1840 Male, age 53, unknown 65.4
1831 Male, age 72, unknown 63.7
2464 Female, age 72, unknown 58.8
Periaquaductal grey, lateral
nTPM: 75.5
2272 Male, age 74, both hemispheres 84.7
2053 Male, age 18, unknown 74.6
2140 Male, age 76, both hemispheres 67.1
Pretectal area
nTPM: 81.5
1816 Male, age 51, unknown 96.0
2273 Male, age 74, both hemispheres 90.9
1817 Female, age 42, unknown 90.7
2007 Male, age 72, unknown 90.2
1815 Male, age 53, unknown 84.6
2667 Female, age 75, unknown 83.8
1944 Female, age 72, unknown 81.6
2224 Female, age 72, unknown 80.1
2407 Male, age 75, both hemispheres 71.0
2825 Male, age 18, unknown 66.5
2316 Male, age 76, right hemisphere 60.5
Red nucleus
nTPM: 62.7
2584 Male, age 75, left hemisphere 77.4
2725 Female, age 75, unknown 73.9
2785 Male, age 18, unknown 66.7
1821 Female, age 72, unknown 63.6
2823 Male, age 76, right hemisphere 62.8
2503 Female, age 72, unknown 62.1
2227 Male, age 72, unknown 59.1
2769 Male, age 72, unknown 58.4
1865 Male, age 51, unknown 58.1
1904 Male, age 53, unknown 57.9
2588 Male, age 74, left hemisphere 57.8
1954 Female, age 42, unknown 55.1
Substantia nigra
nTPM: 77.7
1916 Female, age 42, unknown 95.1
1851 Male, age 51, unknown 90.4
1889 Female, age 72, unknown 84.5
2583 Male, age 75, right hemisphere 78.0
1941 Male, age 53, unknown 76.9
2699 Male, age 18, unknown 73.5
2590 Female, age 75, unknown 73.0
2241 Male, age 72, unknown 72.9
2665 Male, age 74, both hemispheres 70.3
2409 Female, age 72, unknown 62.1
Superior colliculus
nTPM: 73.9
1796 Male, age 53, unknown 86.0
2664 Male, age 75, both hemispheres 78.1
1913 Female, age 42, unknown 78.0
2261 Male, age 18, unknown 77.8
2587 Male, age 74, left hemisphere 74.2
2087 Female, age 72, unknown 73.4
2668 Female, age 75, unknown 72.8
1839 Male, age 51, unknown 68.9
1995 Male, age 72, unknown 68.8
1895 Male, age 76, right hemisphere 60.7
Ventral tegmental area
nTPM: 77.4
2410 Female, age 72, unknown 80.3
2218 Male, age 76, both hemispheres 80.1
1915 Female, age 42, unknown 78.7
1942 Male, age 51, unknown 75.8
2021 Male, age 53, unknown 74.7
2223 Female, age 72, unknown 74.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 115.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 115.0
Samples: 139

Max nTPM: 212.8
Min nTPM: 64.9
Std nTPM: 26.7
Median nTPM: 110.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 212.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 197.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 193.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 177.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 176.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 171.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 165.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 165.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 161.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 157.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 156.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.3
Samples: 4

Max nTPM: 76.8
Min nTPM: 53.9
Sample A Female 76.8
Sample B Female 53.9
Sample C Male 57.6
Sample D Male 64.9
Midbrain
nTPM: 65.8
Samples: 4

Max nTPM: 116.4
Min nTPM: 42.1
Sample A Female 116.4
Sample B Female 55.7
Sample C Male 49.1
Sample D Male 42.1
Periaqueductal gray
nTPM: 51.8
Samples: 3

Max nTPM: 55.6
Min nTPM: 48.5
Sample B Female 51.2
Sample C Male 55.6
Sample D Male 48.5
Superior colliculi
nTPM: 68.3
Samples: 4

Max nTPM: 74.7
Min nTPM: 59.1
Sample A Female 71.5
Sample B Female 74.7
Sample C Male 67.7
Sample D Male 59.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 41.7
Min nTPM: 32.8
Sample A Male 41.7
Sample B Male 32.8
Sample C Female 33.5
Sample D Female 37.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68341466 Antisense, RP_041207_01_F03, Mouse strain C57BL/6J (56 days, male) 0.3

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