MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.2 nTPM
HPA Brain:70.8 nTPM
GTEx:53.2 nTPM
FANTOM5:125.0 Scaled Tags Per Million
Pig:17.3 nTPM
Mouse:3.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 70.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.0
2666 Male, age 74, left hemisphere 58.1
1830 Male, age 51, unknown 57.8
1870 Female, age 42, unknown 55.8
2019 Male, age 18, unknown 55.0
1833 Male, age 53, unknown 51.7
2411 Female, age 72, unknown 51.5
2586 Male, age 75, left hemisphere 51.0
2828 Female, age 72, unknown 46.6
1827 Male, age 72, unknown 36.0
2219 Male, age 76, both hemispheres 26.2
Dorsal raphe nucleus
nTPM: 35.2
2750 Male, age 76, both hemispheres 56.8
2016 Female, age 72, unknown 40.7
1828 Male, age 53, unknown 32.5
2298 Female, age 72, unknown 23.7
2047 Male, age 72, unknown 22.5
Inferior colliculus
nTPM: 33.4
1848 Female, age 42, unknown 37.1
1890 Male, age 53, unknown 33.9
2097 Female, age 72, unknown 32.1
2849 Male, age 72, unknown 30.7
Median raphe nucleus
nTPM: 27.1
2220 Male, age 76, midline 27.1
Periaquaductal grey, anterior
nTPM: 33.4
2502 Female, age 75, unknown 40.0
1947 Male, age 18, unknown 33.2
1795 Male, age 51, unknown 27.0
Periaquaductal grey, dorsal
nTPM: 24.1
2464 Female, age 72, unknown 38.4
1831 Male, age 72, unknown 26.6
1840 Male, age 53, unknown 15.9
2850 Male, age 76, both hemispheres 15.5
Periaquaductal grey, lateral
nTPM: 26.5
2053 Male, age 18, unknown 29.4
2272 Male, age 74, both hemispheres 27.5
2140 Male, age 76, both hemispheres 22.7
Pretectal area
nTPM: 31.0
2316 Male, age 76, right hemisphere 45.7
1815 Male, age 53, unknown 41.8
1817 Female, age 42, unknown 36.7
2007 Male, age 72, unknown 36.2
2825 Male, age 18, unknown 32.0
2407 Male, age 75, both hemispheres 31.6
2224 Female, age 72, unknown 28.0
2273 Male, age 74, both hemispheres 24.1
2667 Female, age 75, unknown 23.7
1816 Male, age 51, unknown 20.8
1944 Female, age 72, unknown 20.7
Red nucleus
nTPM: 70.8
1865 Male, age 51, unknown 81.1
1904 Male, age 53, unknown 80.0
2823 Male, age 76, right hemisphere 77.6
2769 Male, age 72, unknown 77.4
2227 Male, age 72, unknown 75.5
2503 Female, age 72, unknown 74.3
2588 Male, age 74, left hemisphere 72.1
2785 Male, age 18, unknown 67.8
1954 Female, age 42, unknown 67.5
2725 Female, age 75, unknown 62.8
1821 Female, age 72, unknown 62.4
2584 Male, age 75, left hemisphere 51.4
Substantia nigra
nTPM: 39.5
1851 Male, age 51, unknown 48.3
2590 Female, age 75, unknown 47.5
2583 Male, age 75, right hemisphere 46.0
2409 Female, age 72, unknown 43.4
2665 Male, age 74, both hemispheres 43.1
2699 Male, age 18, unknown 40.3
1941 Male, age 53, unknown 33.1
2241 Male, age 72, unknown 31.8
1889 Female, age 72, unknown 31.4
1916 Female, age 42, unknown 30.2
Superior colliculus
nTPM: 40.9
1995 Male, age 72, unknown 61.0
1913 Female, age 42, unknown 56.7
2587 Male, age 74, left hemisphere 44.5
1839 Male, age 51, unknown 43.6
2668 Female, age 75, unknown 38.0
1796 Male, age 53, unknown 37.1
1895 Male, age 76, right hemisphere 35.6
2664 Male, age 75, both hemispheres 34.1
2087 Female, age 72, unknown 29.4
2261 Male, age 18, unknown 28.9
Ventral tegmental area
nTPM: 40.2
2410 Female, age 72, unknown 46.4
2223 Female, age 72, unknown 42.9
2021 Male, age 53, unknown 41.5
1915 Female, age 42, unknown 37.5
1942 Male, age 51, unknown 36.9
2218 Male, age 76, both hemispheres 36.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.2
Samples: 139

Max nTPM: 127.1
Min nTPM: 12.7
Std nTPM: 26.0
Median nTPM: 46.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 127.1
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 126.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 124.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 120.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 119.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 118.7
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 116.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 115.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 105.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 98.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 98.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.0
FF:10158-103A5 76 years, female 125.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 16.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 12.9
Sample A Female 12.9
Sample B Female 17.5
Sample C Male 13.9
Sample D Male 21.7
Midbrain
nTPM: 17.3
Samples: 4

Max nTPM: 24.1
Min nTPM: 9.6
Sample A Female 24.1
Sample B Female 22.6
Sample C Male 12.7
Sample D Male 9.6
Periaqueductal gray
nTPM: 13.8
Samples: 3

Max nTPM: 19.7
Min nTPM: 9.2
Sample B Female 19.7
Sample C Male 12.5
Sample D Male 9.2
Superior colliculi
nTPM: 14.2
Samples: 4

Max nTPM: 16.6
Min nTPM: 12.2
Sample A Female 13.8
Sample B Female 12.2
Sample C Male 16.6
Sample D Male 14.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 3.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.0
Samples: 4

Max nTPM: 4.1
Min nTPM: 1.4
Sample A Male 3.0
Sample B Male 1.4
Sample C Female 4.1
Sample D Female 3.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68523330 Antisense, RP_050118_02_E09, Mouse strain C57BL/6J (56 days, male) 0.0

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