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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
143.0
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 143.0
Samples: 152
Max nTPM: 524.9
Min nTPM: 9.7
Std nTPM: 89.4
Median nTPM: 127.1
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
524.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
418.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
359.3
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
331.1
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
309.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
308.7
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
300.6
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
298.2
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
284.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
276.3
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
272.4
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
263.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
261.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
260.7
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
260.2
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
259.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
256.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
256.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
255.5
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
253.6
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
252.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
248.8
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
248.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
245.6
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
242.4
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
241.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
241.3
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
240.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
235.9
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
234.6
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
232.2
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
231.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
223.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
223.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
217.9
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
215.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
213.1
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
208.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
204.8
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
191.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
191.4
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
190.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
189.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
185.5
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
185.2
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
180.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
179.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
177.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
174.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
171.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
170.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
168.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
168.0
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
167.9
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
167.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
163.0
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
160.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
159.9
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
157.5
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
157.4
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
155.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
151.7
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
151.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
147.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
146.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
145.8
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
145.3
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
144.6
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
140.5
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
134.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
134.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
132.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
130.3
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
130.0
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
127.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
127.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
126.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
122.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
117.9
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
117.9
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
117.3
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
115.4
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
113.6
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
109.7
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
108.1
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
107.9
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
107.8
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
106.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
104.4
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
103.5
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
102.6
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
102.6
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
102.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
101.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
101.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
92.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
91.1
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
88.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
88.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
88.2
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
86.4
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
86.1
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
86.0
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
83.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
80.1
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
79.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
79.5
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
78.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
77.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
75.1
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
73.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
72.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
69.7
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
68.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
68.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
68.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
67.0
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
66.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
65.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
65.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
64.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
63.9
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
63.6
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
63.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
62.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
59.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
58.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
58.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
58.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
57.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
56.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
56.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
55.5
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
55.4
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
52.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
50.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
47.3
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
40.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
38.5
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
36.7
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
33.3
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
32.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
32.4
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
31.3
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
29.5
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
27.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
27.5
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
22.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
17.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
15.2
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
14.4
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
9.7
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
658.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 658.1
Samples: 4
Max nTPM: 716.2
Min nTPM: 619.7
Sample A
Male
716.2
Sample B
Male
619.7
Sample C
Female
675.1
Sample D
Female
621.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.