MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:125.8 nTPM
HPA Brain:219.4 nTPM
GTEx:125.8 nTPM
FANTOM5:36.5 Scaled Tags Per Million
Pig:448.0 nTPM
Mouse:533.8 nTPM
Allen mouse:17.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 219.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 145.5
2219 Male, age 76, both hemispheres 276.1
1827 Male, age 72, unknown 176.7
2019 Male, age 18, unknown 162.0
2828 Female, age 72, unknown 155.1
2411 Female, age 72, unknown 136.2
2666 Male, age 74, left hemisphere 125.7
1833 Male, age 53, unknown 118.2
1870 Female, age 42, unknown 111.2
1830 Male, age 51, unknown 101.5
2586 Male, age 75, left hemisphere 92.2
Dorsal raphe nucleus
nTPM: 136.2
2298 Female, age 72, unknown 171.9
2750 Male, age 76, both hemispheres 155.4
1828 Male, age 53, unknown 146.4
2047 Male, age 72, unknown 130.1
2016 Female, age 72, unknown 77.3
Inferior colliculus
nTPM: 141.4
2097 Female, age 72, unknown 172.3
1890 Male, age 53, unknown 140.9
1848 Female, age 42, unknown 127.9
2849 Male, age 72, unknown 124.6
Median raphe nucleus
nTPM: 217.3
2220 Male, age 76, midline 217.3
Periaquaductal grey, anterior
nTPM: 170.8
2502 Female, age 75, unknown 182.9
1795 Male, age 51, unknown 174.8
1947 Male, age 18, unknown 154.8
Periaquaductal grey, dorsal
nTPM: 112.9
1831 Male, age 72, unknown 128.2
2850 Male, age 76, both hemispheres 118.4
1840 Male, age 53, unknown 106.5
2464 Female, age 72, unknown 98.4
Periaquaductal grey, lateral
nTPM: 102.9
2053 Male, age 18, unknown 107.4
2272 Male, age 74, both hemispheres 105.1
2140 Male, age 76, both hemispheres 96.3
Pretectal area
nTPM: 198.7
2667 Female, age 75, unknown 312.9
1816 Male, age 51, unknown 302.2
1944 Female, age 72, unknown 288.5
1817 Female, age 42, unknown 272.2
2007 Male, age 72, unknown 246.1
1815 Male, age 53, unknown 225.9
2224 Female, age 72, unknown 141.6
2825 Male, age 18, unknown 115.9
2407 Male, age 75, both hemispheres 102.8
2316 Male, age 76, right hemisphere 100.7
2273 Male, age 74, both hemispheres 76.8
Red nucleus
nTPM: 131.8
1821 Female, age 72, unknown 161.9
2785 Male, age 18, unknown 158.3
2823 Male, age 76, right hemisphere 141.7
2584 Male, age 75, left hemisphere 139.5
1954 Female, age 42, unknown 135.1
2725 Female, age 75, unknown 127.6
1904 Male, age 53, unknown 126.7
2503 Female, age 72, unknown 121.8
2588 Male, age 74, left hemisphere 119.5
1865 Male, age 51, unknown 117.6
2769 Male, age 72, unknown 116.2
2227 Male, age 72, unknown 115.7
Substantia nigra
nTPM: 219.4
1916 Female, age 42, unknown 361.6
2665 Male, age 74, both hemispheres 287.4
1851 Male, age 51, unknown 252.4
1889 Female, age 72, unknown 250.1
1941 Male, age 53, unknown 239.3
2409 Female, age 72, unknown 200.0
2241 Male, age 72, unknown 195.3
2699 Male, age 18, unknown 191.1
2590 Female, age 75, unknown 131.4
2583 Male, age 75, right hemisphere 85.3
Superior colliculus
nTPM: 144.8
2087 Female, age 72, unknown 235.0
1796 Male, age 53, unknown 189.0
2261 Male, age 18, unknown 170.7
1895 Male, age 76, right hemisphere 170.0
1913 Female, age 42, unknown 128.0
2668 Female, age 75, unknown 117.8
1839 Male, age 51, unknown 115.5
2587 Male, age 74, left hemisphere 110.5
2664 Male, age 75, both hemispheres 106.4
1995 Male, age 72, unknown 105.0
Ventral tegmental area
nTPM: 198.0
2218 Male, age 76, both hemispheres 328.8
2410 Female, age 72, unknown 260.3
1915 Female, age 42, unknown 220.6
1942 Male, age 51, unknown 154.8
2223 Female, age 72, unknown 120.5
2021 Male, age 53, unknown 103.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 125.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 125.8
Samples: 139

Max nTPM: 519.7
Min nTPM: 8.4
Std nTPM: 119.9
Median nTPM: 89.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 519.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 513.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 466.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 456.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 422.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 406.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 391.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 374.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 358.2
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 351.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 339.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.5
FF:10158-103A5 76 years, female 36.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 448.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 318.6
Samples: 4

Max nTPM: 501.5
Min nTPM: 114.7
Sample A Female 501.5
Sample B Female 217.5
Sample C Male 440.6
Sample D Male 114.7
Midbrain
nTPM: 382.1
Samples: 4

Max nTPM: 686.3
Min nTPM: 119.2
Sample A Female 119.2
Sample B Female 241.0
Sample C Male 686.3
Sample D Male 481.7
Periaqueductal gray
nTPM: 241.0
Samples: 3

Max nTPM: 314.9
Min nTPM: 200.0
Sample B Female 208.0
Sample C Male 314.9
Sample D Male 200.0
Superior colliculi
nTPM: 448.0
Samples: 4

Max nTPM: 662.9
Min nTPM: 222.5
Sample A Female 461.6
Sample B Female 222.5
Sample C Male 662.9
Sample D Male 444.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 533.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 533.8
Samples: 4

Max nTPM: 558.0
Min nTPM: 519.9
Sample A Male 558.0
Sample B Male 523.3
Sample C Female 519.9
Sample D Female 533.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.8
68924503 Antisense, RP_050303_02_E02, Mouse strain C57BL/6J (56 days, male) 17.8

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