MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA Brain:12.7 nTPM
GTEx:4.0 nTPM
FANTOM5:20.3 Scaled Tags Per Million
Pig:8.9 nTPM
Mouse:6.8 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 12.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.7
2586 Male, age 75, left hemisphere 16.8
2019 Male, age 18, unknown 12.7
1827 Male, age 72, unknown 12.5
2828 Female, age 72, unknown 12.1
2666 Male, age 74, left hemisphere 11.5
2219 Male, age 76, both hemispheres 10.8
1833 Male, age 53, unknown 10.7
1870 Female, age 42, unknown 10.7
1830 Male, age 51, unknown 9.5
2411 Female, age 72, unknown 9.5
Dorsal raphe nucleus
nTPM: 9.4
2298 Female, age 72, unknown 10.3
1828 Male, age 53, unknown 9.4
2016 Female, age 72, unknown 9.4
2047 Male, age 72, unknown 9.1
2750 Male, age 76, both hemispheres 9.0
Inferior colliculus
nTPM: 10.5
2849 Male, age 72, unknown 11.3
1890 Male, age 53, unknown 10.5
1848 Female, age 42, unknown 10.3
2097 Female, age 72, unknown 10.0
Median raphe nucleus
nTPM: 10.1
2220 Male, age 76, midline 10.1
Periaquaductal grey, anterior
nTPM: 12.3
1795 Male, age 51, unknown 13.7
2502 Female, age 75, unknown 12.9
1947 Male, age 18, unknown 10.3
Periaquaductal grey, dorsal
nTPM: 11.0
1831 Male, age 72, unknown 12.1
2850 Male, age 76, both hemispheres 11.6
1840 Male, age 53, unknown 10.8
2464 Female, age 72, unknown 9.4
Periaquaductal grey, lateral
nTPM: 11.7
2140 Male, age 76, both hemispheres 12.5
2053 Male, age 18, unknown 11.5
2272 Male, age 74, both hemispheres 11.1
Pretectal area
nTPM: 12.7
1816 Male, age 51, unknown 18.1
1944 Female, age 72, unknown 15.2
2007 Male, age 72, unknown 15.2
1815 Male, age 53, unknown 13.9
1817 Female, age 42, unknown 13.5
2407 Male, age 75, both hemispheres 13.1
2667 Female, age 75, unknown 11.2
2273 Male, age 74, both hemispheres 10.6
2316 Male, age 76, right hemisphere 10.4
2825 Male, age 18, unknown 9.9
2224 Female, age 72, unknown 9.2
Red nucleus
nTPM: 10.5
2584 Male, age 75, left hemisphere 13.9
2785 Male, age 18, unknown 13.2
2823 Male, age 76, right hemisphere 10.5
2725 Female, age 75, unknown 10.3
2588 Male, age 74, left hemisphere 10.2
2769 Male, age 72, unknown 10.0
1904 Male, age 53, unknown 9.9
1954 Female, age 42, unknown 9.9
1865 Male, age 51, unknown 9.7
2227 Male, age 72, unknown 9.7
2503 Female, age 72, unknown 9.5
1821 Female, age 72, unknown 9.1
Substantia nigra
nTPM: 10.5
2583 Male, age 75, right hemisphere 15.0
2665 Male, age 74, both hemispheres 12.7
1889 Female, age 72, unknown 11.3
2590 Female, age 75, unknown 11.1
2699 Male, age 18, unknown 10.1
2409 Female, age 72, unknown 9.9
1941 Male, age 53, unknown 9.5
1851 Male, age 51, unknown 9.4
1916 Female, age 42, unknown 8.5
2241 Male, age 72, unknown 7.9
Superior colliculus
nTPM: 12.2
2087 Female, age 72, unknown 16.1
2664 Male, age 75, both hemispheres 14.3
2261 Male, age 18, unknown 13.6
1796 Male, age 53, unknown 13.3
1913 Female, age 42, unknown 12.9
2668 Female, age 75, unknown 12.1
1995 Male, age 72, unknown 11.6
1839 Male, age 51, unknown 10.3
2587 Male, age 74, left hemisphere 10.0
1895 Male, age 76, right hemisphere 8.1
Ventral tegmental area
nTPM: 9.6
2218 Male, age 76, both hemispheres 10.5
2223 Female, age 72, unknown 10.1
2021 Male, age 53, unknown 9.9
1942 Male, age 51, unknown 9.7
1915 Female, age 42, unknown 9.2
2410 Female, age 72, unknown 8.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 4.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 4.0
Samples: 139

Max nTPM: 7.4
Min nTPM: 2.5
Std nTPM: 0.9
Median nTPM: 3.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 7.4
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 7.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 6.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 6.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 6.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 5.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 5.9
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 5.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 5.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.3
FF:10158-103A5 76 years, female 20.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.9
Samples: 4

Max nTPM: 10.2
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 9.8
Sample C Male 8.1
Sample D Male 10.2
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.5
Sample A Female 10.3
Sample B Female 8.3
Sample C Male 7.5
Sample D Male 7.5
Periaqueductal gray
nTPM: 8.4
Samples: 3

Max nTPM: 8.7
Min nTPM: 8.0
Sample B Female 8.5
Sample C Male 8.7
Sample D Male 8.0
Superior colliculi
nTPM: 8.4
Samples: 4

Max nTPM: 9.6
Min nTPM: 7.6
Sample A Female 8.2
Sample B Female 9.6
Sample C Male 7.6
Sample D Male 8.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.8
Min nTPM: 5.9
Sample A Male 7.8
Sample B Male 5.9
Sample C Female 6.0
Sample D Female 7.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
532704 Antisense, RP_040825_01_F03, Mouse strain C57BL/6J (56 days, male) 2.4

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