MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.9 nTPM
HPA Brain:145.6 nTPM
GTEx:74.9 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:194.4 nTPM
Mouse:167.0 nTPM
Allen mouse:16.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 145.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 103.4
2019 Male, age 18, unknown 335.4
2586 Male, age 75, left hemisphere 144.9
2666 Male, age 74, left hemisphere 86.3
2828 Female, age 72, unknown 80.8
1827 Male, age 72, unknown 73.9
1830 Male, age 51, unknown 69.5
2219 Male, age 76, both hemispheres 69.5
1833 Male, age 53, unknown 60.5
2411 Female, age 72, unknown 59.3
1870 Female, age 42, unknown 54.4
Dorsal raphe nucleus
nTPM: 56.8
1828 Male, age 53, unknown 97.1
2047 Male, age 72, unknown 66.2
2750 Male, age 76, both hemispheres 46.4
2016 Female, age 72, unknown 37.6
2298 Female, age 72, unknown 36.5
Inferior colliculus
nTPM: 108.3
2097 Female, age 72, unknown 136.1
1890 Male, age 53, unknown 125.5
1848 Female, age 42, unknown 98.0
2849 Male, age 72, unknown 73.4
Median raphe nucleus
nTPM: 26.7
2220 Male, age 76, midline 26.7
Periaquaductal grey, anterior
nTPM: 44.2
1795 Male, age 51, unknown 51.5
2502 Female, age 75, unknown 49.7
1947 Male, age 18, unknown 31.5
Periaquaductal grey, dorsal
nTPM: 42.2
2464 Female, age 72, unknown 60.0
1831 Male, age 72, unknown 58.6
2850 Male, age 76, both hemispheres 27.3
1840 Male, age 53, unknown 22.8
Periaquaductal grey, lateral
nTPM: 30.8
2272 Male, age 74, both hemispheres 32.3
2140 Male, age 76, both hemispheres 30.2
2053 Male, age 18, unknown 30.0
Pretectal area
nTPM: 145.6
2007 Male, age 72, unknown 321.9
1817 Female, age 42, unknown 316.5
1944 Female, age 72, unknown 261.5
1816 Male, age 51, unknown 248.7
1815 Male, age 53, unknown 150.5
2667 Female, age 75, unknown 99.8
2407 Male, age 75, both hemispheres 59.9
2316 Male, age 76, right hemisphere 48.7
2273 Male, age 74, both hemispheres 34.8
2825 Male, age 18, unknown 33.1
2224 Female, age 72, unknown 25.9
Red nucleus
nTPM: 137.3
2785 Male, age 18, unknown 332.0
2588 Male, age 74, left hemisphere 170.9
1821 Female, age 72, unknown 144.8
2584 Male, age 75, left hemisphere 138.9
2823 Male, age 76, right hemisphere 135.3
1865 Male, age 51, unknown 121.3
2503 Female, age 72, unknown 117.2
2769 Male, age 72, unknown 110.3
1954 Female, age 42, unknown 105.6
2227 Male, age 72, unknown 102.3
2725 Female, age 75, unknown 91.8
1904 Male, age 53, unknown 77.6
Substantia nigra
nTPM: 75.6
1889 Female, age 72, unknown 208.3
1941 Male, age 53, unknown 143.4
2583 Male, age 75, right hemisphere 88.0
2665 Male, age 74, both hemispheres 73.2
2590 Female, age 75, unknown 55.2
2409 Female, age 72, unknown 52.6
1916 Female, age 42, unknown 45.4
1851 Male, age 51, unknown 44.5
2699 Male, age 18, unknown 25.1
2241 Male, age 72, unknown 20.6
Superior colliculus
nTPM: 94.1
2087 Female, age 72, unknown 179.7
2668 Female, age 75, unknown 116.0
1895 Male, age 76, right hemisphere 112.9
1995 Male, age 72, unknown 99.6
1913 Female, age 42, unknown 95.2
2261 Male, age 18, unknown 85.3
1839 Male, age 51, unknown 71.6
2664 Male, age 75, both hemispheres 62.6
1796 Male, age 53, unknown 59.9
2587 Male, age 74, left hemisphere 57.9
Ventral tegmental area
nTPM: 44.8
2410 Female, age 72, unknown 74.7
2223 Female, age 72, unknown 49.4
1915 Female, age 42, unknown 49.0
2218 Male, age 76, both hemispheres 33.6
2021 Male, age 53, unknown 30.9
1942 Male, age 51, unknown 30.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.9
Samples: 139

Max nTPM: 522.7
Min nTPM: 14.3
Std nTPM: 60.7
Median nTPM: 55.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 522.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 283.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 269.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 233.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 190.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 180.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 168.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 164.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 162.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 159.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 157.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.9
FF:10158-103A5 76 years, female 30.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 194.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 35.8
Samples: 4

Max nTPM: 54.7
Min nTPM: 19.4
Sample A Female 47.0
Sample B Female 22.2
Sample C Male 19.4
Sample D Male 54.7
Midbrain
nTPM: 102.2
Samples: 4

Max nTPM: 193.5
Min nTPM: 29.2
Sample A Female 33.9
Sample B Female 29.2
Sample C Male 193.5
Sample D Male 152.3
Periaqueductal gray
nTPM: 25.1
Samples: 3

Max nTPM: 29.1
Min nTPM: 18.7
Sample B Female 27.5
Sample C Male 29.1
Sample D Male 18.7
Superior colliculi
nTPM: 194.4
Samples: 4

Max nTPM: 308.0
Min nTPM: 101.0
Sample A Female 214.6
Sample B Female 101.0
Sample C Male 308.0
Sample D Male 154.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 167.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.0
Samples: 4

Max nTPM: 179.6
Min nTPM: 159.5
Sample A Male 179.6
Sample B Male 159.5
Sample C Female 165.7
Sample D Female 163.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 16.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.9
77454673 Antisense, RP_070129_01_C06, Mouse strain C57BL/6J (56 days, male) 16.9

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