MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.0 nTPM
HPA Brain:125.7 nTPM
GTEx:14.0 nTPM
FANTOM5:108.7 Scaled Tags Per Million
Pig:70.0 nTPM
Mouse:29.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 125.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 84.6
1870 Female, age 42, unknown 105.6
2586 Male, age 75, left hemisphere 105.1
2828 Female, age 72, unknown 92.5
2411 Female, age 72, unknown 91.0
1833 Male, age 53, unknown 90.3
1830 Male, age 51, unknown 85.3
2019 Male, age 18, unknown 79.9
1827 Male, age 72, unknown 76.0
2666 Male, age 74, left hemisphere 70.7
2219 Male, age 76, both hemispheres 49.5
Dorsal raphe nucleus
nTPM: 118.7
2016 Female, age 72, unknown 153.1
2047 Male, age 72, unknown 125.9
1828 Male, age 53, unknown 125.8
2298 Female, age 72, unknown 108.6
2750 Male, age 76, both hemispheres 80.4
Inferior colliculus
nTPM: 125.7
1890 Male, age 53, unknown 137.0
2097 Female, age 72, unknown 123.4
1848 Female, age 42, unknown 121.3
2849 Male, age 72, unknown 120.9
Median raphe nucleus
nTPM: 68.5
2220 Male, age 76, midline 68.5
Periaquaductal grey, anterior
nTPM: 90.9
2502 Female, age 75, unknown 112.6
1795 Male, age 51, unknown 80.5
1947 Male, age 18, unknown 79.7
Periaquaductal grey, dorsal
nTPM: 123.7
2850 Male, age 76, both hemispheres 151.0
1840 Male, age 53, unknown 137.9
2464 Female, age 72, unknown 115.1
1831 Male, age 72, unknown 90.8
Periaquaductal grey, lateral
nTPM: 113.9
2140 Male, age 76, both hemispheres 151.7
2053 Male, age 18, unknown 106.2
2272 Male, age 74, both hemispheres 83.7
Pretectal area
nTPM: 83.7
2273 Male, age 74, both hemispheres 116.2
2316 Male, age 76, right hemisphere 100.5
2667 Female, age 75, unknown 96.4
2224 Female, age 72, unknown 94.0
2825 Male, age 18, unknown 94.0
2407 Male, age 75, both hemispheres 78.8
1944 Female, age 72, unknown 76.7
1817 Female, age 42, unknown 71.7
1815 Male, age 53, unknown 71.4
1816 Male, age 51, unknown 70.7
2007 Male, age 72, unknown 50.7
Red nucleus
nTPM: 95.5
1954 Female, age 42, unknown 117.9
1821 Female, age 72, unknown 117.3
2769 Male, age 72, unknown 109.6
2227 Male, age 72, unknown 108.9
2503 Female, age 72, unknown 106.4
1904 Male, age 53, unknown 103.4
1865 Male, age 51, unknown 102.8
2823 Male, age 76, right hemisphere 94.2
2785 Male, age 18, unknown 82.9
2725 Female, age 75, unknown 76.1
2588 Male, age 74, left hemisphere 68.7
2584 Male, age 75, left hemisphere 58.4
Substantia nigra
nTPM: 85.6
2699 Male, age 18, unknown 133.4
2241 Male, age 72, unknown 98.0
2409 Female, age 72, unknown 86.3
1889 Female, age 72, unknown 85.5
1916 Female, age 42, unknown 84.2
1851 Male, age 51, unknown 83.5
2583 Male, age 75, right hemisphere 77.4
2590 Female, age 75, unknown 72.6
1941 Male, age 53, unknown 71.3
2665 Male, age 74, both hemispheres 64.3
Superior colliculus
nTPM: 92.6
1995 Male, age 72, unknown 128.7
2664 Male, age 75, both hemispheres 111.1
1913 Female, age 42, unknown 108.8
1839 Male, age 51, unknown 98.8
2587 Male, age 74, left hemisphere 92.1
2668 Female, age 75, unknown 87.4
1895 Male, age 76, right hemisphere 81.5
2087 Female, age 72, unknown 75.6
1796 Male, age 53, unknown 73.9
2261 Male, age 18, unknown 68.2
Ventral tegmental area
nTPM: 89.3
2223 Female, age 72, unknown 101.5
2410 Female, age 72, unknown 97.1
1942 Male, age 51, unknown 93.5
2021 Male, age 53, unknown 91.0
1915 Female, age 42, unknown 84.5
2218 Male, age 76, both hemispheres 68.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.0
Samples: 139

Max nTPM: 34.6
Min nTPM: 2.7
Std nTPM: 6.2
Median nTPM: 13.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 34.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 32.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 32.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 29.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 28.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 27.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 27.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 26.1
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 25.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 25.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 25.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.7
FF:10158-103A5 76 years, female 108.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 70.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 60.6
Samples: 4

Max nTPM: 68.0
Min nTPM: 55.2
Sample A Female 63.2
Sample B Female 55.2
Sample C Male 55.8
Sample D Male 68.0
Midbrain
nTPM: 70.0
Samples: 4

Max nTPM: 119.9
Min nTPM: 44.4
Sample A Female 119.9
Sample B Female 67.0
Sample C Male 44.4
Sample D Male 48.6
Periaqueductal gray
nTPM: 56.1
Samples: 3

Max nTPM: 59.2
Min nTPM: 49.8
Sample B Female 59.2
Sample C Male 49.8
Sample D Male 59.2
Superior colliculi
nTPM: 45.4
Samples: 4

Max nTPM: 52.0
Min nTPM: 33.1
Sample A Female 50.9
Sample B Female 33.1
Sample C Male 45.4
Sample D Male 52.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 30.8
Min nTPM: 27.4
Sample A Male 27.4
Sample B Male 29.6
Sample C Female 30.5
Sample D Female 30.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70278105 Antisense, RP_050531_02_D12, Mouse strain C57BL/6J (56 days, male) 0.2
73931631 Antisense, RP_051214_04_A11, Mouse strain C57BL/6J (56 days, male) 0.2

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