MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:124.4 nTPM
HPA Brain:93.1 nTPM
GTEx:124.4 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:138.6 nTPM
Mouse:337.7 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 93.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.8
2219 Male, age 76, both hemispheres 101.5
1870 Female, age 42, unknown 86.5
2828 Female, age 72, unknown 80.9
1833 Male, age 53, unknown 74.4
1827 Male, age 72, unknown 71.3
1830 Male, age 51, unknown 70.1
2666 Male, age 74, left hemisphere 66.4
2586 Male, age 75, left hemisphere 59.2
2019 Male, age 18, unknown 57.5
2411 Female, age 72, unknown 50.5
Dorsal raphe nucleus
nTPM: 63.0
1828 Male, age 53, unknown 71.4
2016 Female, age 72, unknown 67.6
2298 Female, age 72, unknown 63.6
2750 Male, age 76, both hemispheres 56.3
2047 Male, age 72, unknown 56.2
Inferior colliculus
nTPM: 92.9
2097 Female, age 72, unknown 112.3
1848 Female, age 42, unknown 96.4
2849 Male, age 72, unknown 84.3
1890 Male, age 53, unknown 78.8
Median raphe nucleus
nTPM: 67.9
2220 Male, age 76, midline 67.9
Periaquaductal grey, anterior
nTPM: 74.6
1795 Male, age 51, unknown 77.8
1947 Male, age 18, unknown 76.1
2502 Female, age 75, unknown 70.0
Periaquaductal grey, dorsal
nTPM: 74.9
2850 Male, age 76, both hemispheres 78.9
1831 Male, age 72, unknown 78.7
1840 Male, age 53, unknown 78.7
2464 Female, age 72, unknown 63.4
Periaquaductal grey, lateral
nTPM: 73.9
2053 Male, age 18, unknown 86.1
2140 Male, age 76, both hemispheres 68.6
2272 Male, age 74, both hemispheres 66.9
Pretectal area
nTPM: 93.1
2667 Female, age 75, unknown 123.7
1817 Female, age 42, unknown 117.6
1944 Female, age 72, unknown 116.7
1816 Male, age 51, unknown 95.0
1815 Male, age 53, unknown 93.9
2224 Female, age 72, unknown 91.6
2273 Male, age 74, both hemispheres 82.3
2825 Male, age 18, unknown 80.6
2007 Male, age 72, unknown 79.9
2316 Male, age 76, right hemisphere 73.7
2407 Male, age 75, both hemispheres 69.6
Red nucleus
nTPM: 74.5
1954 Female, age 42, unknown 94.6
1865 Male, age 51, unknown 88.8
2503 Female, age 72, unknown 87.2
2227 Male, age 72, unknown 81.7
2769 Male, age 72, unknown 80.9
1904 Male, age 53, unknown 78.8
1821 Female, age 72, unknown 77.0
2823 Male, age 76, right hemisphere 68.7
2785 Male, age 18, unknown 67.5
2725 Female, age 75, unknown 63.8
2588 Male, age 74, left hemisphere 62.8
2584 Male, age 75, left hemisphere 42.8
Substantia nigra
nTPM: 81.0
2699 Male, age 18, unknown 116.7
1889 Female, age 72, unknown 101.2
2665 Male, age 74, both hemispheres 92.4
1941 Male, age 53, unknown 87.8
1916 Female, age 42, unknown 79.0
1851 Male, age 51, unknown 75.2
2409 Female, age 72, unknown 70.0
2241 Male, age 72, unknown 68.4
2583 Male, age 75, right hemisphere 66.9
2590 Female, age 75, unknown 52.2
Superior colliculus
nTPM: 89.1
2668 Female, age 75, unknown 119.2
2087 Female, age 72, unknown 109.8
1995 Male, age 72, unknown 107.0
1913 Female, age 42, unknown 98.9
1895 Male, age 76, right hemisphere 91.9
1796 Male, age 53, unknown 76.1
1839 Male, age 51, unknown 75.6
2261 Male, age 18, unknown 74.4
2587 Male, age 74, left hemisphere 74.1
2664 Male, age 75, both hemispheres 64.2
Ventral tegmental area
nTPM: 69.6
1915 Female, age 42, unknown 80.5
2218 Male, age 76, both hemispheres 77.5
2223 Female, age 72, unknown 68.1
2410 Female, age 72, unknown 67.6
1942 Male, age 51, unknown 64.3
2021 Male, age 53, unknown 59.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 124.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 124.4
Samples: 139

Max nTPM: 225.5
Min nTPM: 46.8
Std nTPM: 39.0
Median nTPM: 120.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 225.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 219.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 218.9
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 218.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 218.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 213.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 209.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 192.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 191.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 191.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 189.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.4
FF:10158-103A5 76 years, female 125.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 138.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 134.0
Samples: 4

Max nTPM: 173.9
Min nTPM: 86.3
Sample A Female 86.3
Sample B Female 155.9
Sample C Male 119.8
Sample D Male 173.9
Midbrain
nTPM: 110.4
Samples: 4

Max nTPM: 154.3
Min nTPM: 58.0
Sample A Female 58.0
Sample B Female 134.7
Sample C Male 94.5
Sample D Male 154.3
Periaqueductal gray
nTPM: 119.3
Samples: 3

Max nTPM: 132.7
Min nTPM: 110.2
Sample B Female 114.9
Sample C Male 110.2
Sample D Male 132.7
Superior colliculi
nTPM: 138.6
Samples: 4

Max nTPM: 205.3
Min nTPM: 90.8
Sample A Female 131.5
Sample B Female 205.3
Sample C Male 90.8
Sample D Male 126.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 337.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 337.7
Samples: 4

Max nTPM: 353.9
Min nTPM: 314.9
Sample A Male 353.9
Sample B Male 314.9
Sample C Female 343.0
Sample D Female 339.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
77455034 Antisense, RP_070129_02_A05, Mouse strain C57BL/6J (56 days, male) 9.8
2507 Antisense, RP_040324_01_D06, Mouse strain C57BL/6J (56 days, male) 8.7
2508 Antisense, RP_040324_01_D06, Mouse strain C57BL/6J (56 days, male) 7.0
77866882 Antisense, RP_070129_02_A05, Mouse strain C57BL/6J (56 days, male) 7.0

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