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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
3.2
nTPM
HPA Brain:
88.5
nTPM
GTEx:
3.2
nTPM
FANTOM5:
8.1
Scaled Tags Per Million
Pig:
21.3
nTPM
Mouse:
64.9
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max nTPM
88.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 56.8
1870
Female, age 42, unknown
74.7
1833
Male, age 53, unknown
67.3
2411
Female, age 72, unknown
65.3
2219
Male, age 76, both hemispheres
62.4
2666
Male, age 74, left hemisphere
60.4
1827
Male, age 72, unknown
59.9
2828
Female, age 72, unknown
55.7
1830
Male, age 51, unknown
45.3
2586
Male, age 75, left hemisphere
45.3
2019
Male, age 18, unknown
32.2
Dorsal raphe nucleus nTPM: 67.7
2298
Female, age 72, unknown
80.0
2016
Female, age 72, unknown
76.2
1828
Male, age 53, unknown
72.5
2047
Male, age 72, unknown
55.0
2750
Male, age 76, both hemispheres
54.7
Inferior colliculus nTPM: 73.7
1848
Female, age 42, unknown
76.7
2849
Male, age 72, unknown
76.6
1890
Male, age 53, unknown
74.0
2097
Female, age 72, unknown
67.6
Median raphe nucleus nTPM: 50.8
2220
Male, age 76, midline
50.8
Periaquaductal grey, anterior nTPM: 82.1
1947
Male, age 18, unknown
100.9
2502
Female, age 75, unknown
78.6
1795
Male, age 51, unknown
66.7
Periaquaductal grey, dorsal nTPM: 88.5
1840
Male, age 53, unknown
115.1
1831
Male, age 72, unknown
96.1
2850
Male, age 76, both hemispheres
79.4
2464
Female, age 72, unknown
63.3
Periaquaductal grey, lateral nTPM: 66.3
2053
Male, age 18, unknown
80.2
2140
Male, age 76, both hemispheres
78.2
2272
Male, age 74, both hemispheres
40.6
Pretectal area nTPM: 57.5
2224
Female, age 72, unknown
85.2
2667
Female, age 75, unknown
83.6
2825
Male, age 18, unknown
72.0
2316
Male, age 76, right hemisphere
68.2
2273
Male, age 74, both hemispheres
60.6
1944
Female, age 72, unknown
53.6
2407
Male, age 75, both hemispheres
52.1
1816
Male, age 51, unknown
45.1
1815
Male, age 53, unknown
42.1
1817
Female, age 42, unknown
37.3
2007
Male, age 72, unknown
32.4
Red nucleus nTPM: 36.3
2584
Male, age 75, left hemisphere
45.6
1821
Female, age 72, unknown
44.2
2725
Female, age 75, unknown
43.7
2227
Male, age 72, unknown
41.7
2503
Female, age 72, unknown
39.6
2769
Male, age 72, unknown
39.6
2588
Male, age 74, left hemisphere
36.6
1865
Male, age 51, unknown
32.4
1954
Female, age 42, unknown
30.8
1904
Male, age 53, unknown
29.0
2785
Male, age 18, unknown
27.3
2823
Male, age 76, right hemisphere
24.4
Substantia nigra nTPM: 73.6
2241
Male, age 72, unknown
111.5
1916
Female, age 42, unknown
91.5
1851
Male, age 51, unknown
89.1
2699
Male, age 18, unknown
87.8
2409
Female, age 72, unknown
86.6
2665
Male, age 74, both hemispheres
76.9
1889
Female, age 72, unknown
58.4
1941
Male, age 53, unknown
51.2
2590
Female, age 75, unknown
43.1
2583
Male, age 75, right hemisphere
40.2
Superior colliculus nTPM: 59.7
1839
Male, age 51, unknown
83.3
2587
Male, age 74, left hemisphere
70.9
1895
Male, age 76, right hemisphere
70.3
1796
Male, age 53, unknown
69.8
2664
Male, age 75, both hemispheres
60.2
2668
Female, age 75, unknown
52.1
2261
Male, age 18, unknown
49.9
1913
Female, age 42, unknown
49.8
1995
Male, age 72, unknown
45.8
2087
Female, age 72, unknown
44.5
Ventral tegmental area nTPM: 68.6
1915
Female, age 42, unknown
85.8
1942
Male, age 51, unknown
74.0
2021
Male, age 53, unknown
69.9
2218
Male, age 76, both hemispheres
61.4
2223
Female, age 72, unknown
61.4
2410
Female, age 72, unknown
59.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
3.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 3.2
Samples: 139
Max nTPM: 18.5
Min nTPM: 0.7
Std nTPM: 1.7
Median nTPM: 3.0
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
18.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
6.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
6.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
5.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
5.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
5.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
5.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
5.0
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
4.9
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
4.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
4.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
4.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
4.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
4.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
4.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
4.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
4.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
4.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
4.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
4.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
4.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
4.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
4.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
3.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
3.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
3.8
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
3.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
3.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
3.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
3.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
3.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
3.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
3.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
3.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
3.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
3.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
3.4
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
3.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
3.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
3.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
3.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
3.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
3.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
3.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
3.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
3.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
3.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
3.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
3.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
3.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
3.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
3.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
3.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
3.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
3.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
3.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
3.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
3.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
3.1
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
3.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
3.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
3.1
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
3.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
3.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
3.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
2.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
2.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
2.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
2.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
2.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
2.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
2.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
2.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
2.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
2.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
2.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
2.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
2.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
2.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
2.6
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
2.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
2.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
2.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
2.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
2.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
2.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
2.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2.4
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
2.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
2.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
2.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
2.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
2.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
2.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
2.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
2.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
2.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
2.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
2.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
2.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
2.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
2.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
2.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
2.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
2.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
1.9
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1.9
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
1.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
1.8
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
1.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
1.6
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
1.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
1.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
1.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
1.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
1.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
1.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
0.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
64.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 65.0
Samples: 4
Max nTPM: 67.9
Min nTPM: 62.6
Sample A
Male
67.9
Sample B
Male
64.0
Sample C
Female
62.6
Sample D
Female
65.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.