MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:84.1 nTPM
HPA Brain:41.4 nTPM
GTEx:84.1 nTPM
FANTOM5:99.1 Scaled Tags Per Million
Pig:22.6 nTPM
Mouse:30.7 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.8
1870 Female, age 42, unknown 41.4
2219 Male, age 76, both hemispheres 34.1
1827 Male, age 72, unknown 32.8
1830 Male, age 51, unknown 30.4
1833 Male, age 53, unknown 29.1
2019 Male, age 18, unknown 28.5
2411 Female, age 72, unknown 25.6
2666 Male, age 74, left hemisphere 25.4
2828 Female, age 72, unknown 21.4
2586 Male, age 75, left hemisphere 19.1
Dorsal raphe nucleus
nTPM: 31.9
2016 Female, age 72, unknown 33.7
2047 Male, age 72, unknown 33.0
1828 Male, age 53, unknown 32.6
2750 Male, age 76, both hemispheres 32.5
2298 Female, age 72, unknown 27.9
Inferior colliculus
nTPM: 35.0
2097 Female, age 72, unknown 38.0
2849 Male, age 72, unknown 35.7
1890 Male, age 53, unknown 35.0
1848 Female, age 42, unknown 31.1
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Periaquaductal grey, anterior
nTPM: 32.6
1947 Male, age 18, unknown 36.4
1795 Male, age 51, unknown 31.3
2502 Female, age 75, unknown 30.1
Periaquaductal grey, dorsal
nTPM: 30.7
2850 Male, age 76, both hemispheres 36.5
1840 Male, age 53, unknown 32.5
1831 Male, age 72, unknown 28.4
2464 Female, age 72, unknown 25.4
Periaquaductal grey, lateral
nTPM: 28.9
2272 Male, age 74, both hemispheres 31.5
2053 Male, age 18, unknown 29.5
2140 Male, age 76, both hemispheres 25.7
Pretectal area
nTPM: 34.5
1816 Male, age 51, unknown 41.4
2224 Female, age 72, unknown 40.5
2007 Male, age 72, unknown 37.9
1817 Female, age 42, unknown 35.4
2667 Female, age 75, unknown 34.7
1944 Female, age 72, unknown 33.9
2825 Male, age 18, unknown 33.3
2407 Male, age 75, both hemispheres 32.3
1815 Male, age 53, unknown 30.8
2316 Male, age 76, right hemisphere 30.1
2273 Male, age 74, both hemispheres 29.0
Red nucleus
nTPM: 28.9
2725 Female, age 75, unknown 34.8
1821 Female, age 72, unknown 33.8
1865 Male, age 51, unknown 32.8
2584 Male, age 75, left hemisphere 31.8
1904 Male, age 53, unknown 30.7
1954 Female, age 42, unknown 30.1
2785 Male, age 18, unknown 27.7
2503 Female, age 72, unknown 27.3
2823 Male, age 76, right hemisphere 26.7
2588 Male, age 74, left hemisphere 24.4
2769 Male, age 72, unknown 24.2
2227 Male, age 72, unknown 22.1
Substantia nigra
nTPM: 34.6
2241 Male, age 72, unknown 46.9
2409 Female, age 72, unknown 45.3
1941 Male, age 53, unknown 38.2
1889 Female, age 72, unknown 37.8
1916 Female, age 42, unknown 35.2
2699 Male, age 18, unknown 31.7
1851 Male, age 51, unknown 30.1
2583 Male, age 75, right hemisphere 28.5
2665 Male, age 74, both hemispheres 27.2
2590 Female, age 75, unknown 25.0
Superior colliculus
nTPM: 30.4
2587 Male, age 74, left hemisphere 36.3
2668 Female, age 75, unknown 35.7
1895 Male, age 76, right hemisphere 34.1
1913 Female, age 42, unknown 30.8
2087 Female, age 72, unknown 30.3
1839 Male, age 51, unknown 30.1
2261 Male, age 18, unknown 29.4
1796 Male, age 53, unknown 28.6
1995 Male, age 72, unknown 25.9
2664 Male, age 75, both hemispheres 22.3
Ventral tegmental area
nTPM: 32.5
2218 Male, age 76, both hemispheres 38.1
1915 Female, age 42, unknown 37.1
2223 Female, age 72, unknown 36.4
2410 Female, age 72, unknown 30.7
2021 Male, age 53, unknown 27.4
1942 Male, age 51, unknown 25.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 84.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 84.1
Samples: 139

Max nTPM: 153.0
Min nTPM: 57.0
Std nTPM: 15.5
Median nTPM: 82.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 153.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 135.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 129.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 125.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 120.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 114.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 111.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 110.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 109.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 107.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 106.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 99.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 99.1
FF:10158-103A5 76 years, female 99.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.2
Samples: 4

Max nTPM: 31.2
Min nTPM: 18.2
Sample A Female 31.2
Sample B Female 20.3
Sample C Male 19.1
Sample D Male 18.2
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 28.1
Min nTPM: 18.8
Sample A Female 28.1
Sample B Female 23.1
Sample C Male 19.1
Sample D Male 18.8
Periaqueductal gray
nTPM: 22.6
Samples: 3

Max nTPM: 24.1
Min nTPM: 21.6
Sample B Female 22.1
Sample C Male 24.1
Sample D Male 21.6
Superior colliculi
nTPM: 21.6
Samples: 4

Max nTPM: 25.7
Min nTPM: 19.2
Sample A Female 25.7
Sample B Female 19.2
Sample C Male 21.2
Sample D Male 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 28.3
Sample A Male 32.3
Sample B Male 30.3
Sample C Female 32.0
Sample D Female 28.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68522423 Antisense, RP_050118_02_A06, Mouse strain C57BL/6J (56 days, male) 0.3
77910779 Antisense, RP_070208_04_G04, Mouse strain C57BL/6J (56 days, male) 0.0

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