MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:64.9 nTPM
HPA Brain:24.2 nTPM
GTEx:64.9 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:30.1 nTPM
Mouse:93.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.5
2019 Male, age 18, unknown 31.7
2586 Male, age 75, left hemisphere 22.6
2666 Male, age 74, left hemisphere 21.7
2411 Female, age 72, unknown 20.9
1827 Male, age 72, unknown 19.5
1870 Female, age 42, unknown 18.4
2828 Female, age 72, unknown 17.6
1830 Male, age 51, unknown 14.6
2219 Male, age 76, both hemispheres 14.3
1833 Male, age 53, unknown 13.6
Dorsal raphe nucleus
nTPM: 20.2
2298 Female, age 72, unknown 25.7
1828 Male, age 53, unknown 20.1
2750 Male, age 76, both hemispheres 19.8
2047 Male, age 72, unknown 18.7
2016 Female, age 72, unknown 16.7
Inferior colliculus
nTPM: 18.7
2097 Female, age 72, unknown 23.6
1890 Male, age 53, unknown 21.9
1848 Female, age 42, unknown 14.8
2849 Male, age 72, unknown 14.4
Median raphe nucleus
nTPM: 19.6
2220 Male, age 76, midline 19.6
Periaquaductal grey, anterior
nTPM: 19.6
2502 Female, age 75, unknown 21.0
1795 Male, age 51, unknown 20.6
1947 Male, age 18, unknown 17.1
Periaquaductal grey, dorsal
nTPM: 15.2
1840 Male, age 53, unknown 16.7
1831 Male, age 72, unknown 16.2
2850 Male, age 76, both hemispheres 16.0
2464 Female, age 72, unknown 11.8
Periaquaductal grey, lateral
nTPM: 15.7
2272 Male, age 74, both hemispheres 16.7
2140 Male, age 76, both hemispheres 16.3
2053 Male, age 18, unknown 14.0
Pretectal area
nTPM: 24.2
2007 Male, age 72, unknown 37.0
1816 Male, age 51, unknown 34.0
1817 Female, age 42, unknown 33.9
1815 Male, age 53, unknown 26.7
1944 Female, age 72, unknown 24.9
2667 Female, age 75, unknown 22.0
2224 Female, age 72, unknown 20.9
2316 Male, age 76, right hemisphere 19.8
2273 Male, age 74, both hemispheres 16.9
2407 Male, age 75, both hemispheres 15.5
2825 Male, age 18, unknown 14.7
Red nucleus
nTPM: 22.2
2785 Male, age 18, unknown 31.0
1821 Female, age 72, unknown 26.8
2725 Female, age 75, unknown 24.5
2503 Female, age 72, unknown 24.1
1865 Male, age 51, unknown 22.4
1904 Male, age 53, unknown 22.4
2588 Male, age 74, left hemisphere 22.2
1954 Female, age 42, unknown 20.7
2823 Male, age 76, right hemisphere 19.7
2227 Male, age 72, unknown 19.3
2769 Male, age 72, unknown 19.3
2584 Male, age 75, left hemisphere 14.4
Substantia nigra
nTPM: 20.9
1916 Female, age 42, unknown 26.2
1889 Female, age 72, unknown 24.5
2409 Female, age 72, unknown 23.5
2665 Male, age 74, both hemispheres 22.4
1851 Male, age 51, unknown 21.9
2241 Male, age 72, unknown 20.5
1941 Male, age 53, unknown 20.1
2583 Male, age 75, right hemisphere 18.8
2699 Male, age 18, unknown 16.8
2590 Female, age 75, unknown 14.5
Superior colliculus
nTPM: 20.0
2668 Female, age 75, unknown 24.5
2087 Female, age 72, unknown 23.2
1796 Male, age 53, unknown 21.5
2587 Male, age 74, left hemisphere 21.5
1913 Female, age 42, unknown 21.2
2261 Male, age 18, unknown 20.2
1995 Male, age 72, unknown 19.3
1895 Male, age 76, right hemisphere 18.6
2664 Male, age 75, both hemispheres 16.2
1839 Male, age 51, unknown 14.0
Ventral tegmental area
nTPM: 17.9
1915 Female, age 42, unknown 20.2
2223 Female, age 72, unknown 19.6
1942 Male, age 51, unknown 19.1
2410 Female, age 72, unknown 17.6
2218 Male, age 76, both hemispheres 16.1
2021 Male, age 53, unknown 14.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 64.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 64.9
Samples: 139

Max nTPM: 143.5
Min nTPM: 34.2
Std nTPM: 17.6
Median nTPM: 60.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 143.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 135.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 114.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 110.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 110.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 109.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 101.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 101.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 99.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 98.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 95.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.9
Samples: 4

Max nTPM: 36.7
Min nTPM: 23.2
Sample A Female 36.7
Sample B Female 24.6
Sample C Male 27.1
Sample D Male 23.2
Midbrain
nTPM: 30.1
Samples: 4

Max nTPM: 37.7
Min nTPM: 26.5
Sample A Female 37.7
Sample B Female 26.5
Sample C Male 29.2
Sample D Male 27.0
Periaqueductal gray
nTPM: 23.9
Samples: 3

Max nTPM: 28.4
Min nTPM: 19.2
Sample B Female 24.1
Sample C Male 28.4
Sample D Male 19.2
Superior colliculi
nTPM: 30.1
Samples: 4

Max nTPM: 36.0
Min nTPM: 25.6
Sample A Female 36.0
Sample B Female 26.4
Sample C Male 32.4
Sample D Male 25.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 93.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 93.6
Samples: 4

Max nTPM: 95.7
Min nTPM: 90.8
Sample A Male 90.8
Sample B Male 94.7
Sample C Female 93.2
Sample D Female 95.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70795817 Antisense, RP_050712_02_A06, Mouse strain C57BL/6J (56 days, male) 0.1

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