HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:18.9 nTPM
HPA Brain:24.5 nTPM
GTEx:18.9 nTPM
FANTOM5:12.0 Scaled Tags Per Million
Pig:11.3 nTPM
Mouse:38.2 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA001400
Glial cells Medium
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.5
Sample id Sample description nTPM
Hippocampus
nTPM: 23.1
2621 Female, age 67, right hemisphere 27.8
1898 Male, age 80, left hemisphere 24.9
2148 Female, age 91, left hemisphere 24.3
2529 Female, age 94, left hemisphere 21.2
1911 Female, age 85, right hemisphere 20.6
1855 Male, age 76, left hemisphere 19.6
Dentate gyrus
nTPM: 23.8
2531 Female, age 67, both hemispheres 27.2
1927 Female, age 91, both hemispheres 26.2
2530 Female, age 94, left hemisphere 25.8
2528 Male, age 74, both hemispheres 21.8
2010 Male, age 76, both hemispheres 21.7
2246 Female, age 85, both hemispheres 19.9
Entorhinal gyrus
nTPM: 22.2
2613 Female, age 94, left hemisphere 31.7
2686 Male, age 75, right hemisphere 23.4
2764 Male, age 80, right hemisphere 22.5
1787 Male, age 76, left hemisphere 19.7
1938 Female, age 85, left hemisphere 18.2
2117 Female, age 91, right hemisphere 17.5
Hippocampus, CA1
nTPM: 24.1
2749 Male, age 80, left hemisphere 34.1
2527 Male, age 74, both hemispheres 23.3
1873 Female, age 85, both hemispheres 23.1
2082 Female, age 91, right hemisphere 21.3
2045 Male, age 76, both hemispheres 18.7
Hippocampus, CA2
nTPM: 23.9
1963 Male, age 80, left hemisphere 31.2
2437 Female, age 94, left hemisphere 27.2
1892 Male, age 76, both hemispheres 25.5
2113 Female, age 91, right hemisphere 21.2
2249 Male, age 74, both hemispheres 20.1
1940 Female, age 85, left hemisphere 18.0
Hippocampus, CA3
nTPM: 24.5
2861 Female, age 67, both hemispheres 38.2
2137 Male, age 80, left hemisphere 30.8
1867 Male, age 76, both hemispheres 22.8
2620 Female, age 94, left hemisphere 20.8
2436 Male, age 74, both hemispheres 17.6
1891 Female, age 85, both hemispheres 17.0
Parahippocampal cortex
nTPM: 21.1
2622 Female, age 67, right hemisphere 29.4
2245 Female, age 91, both hemispheres 23.2
2692 Male, age 74, both hemispheres 21.6
2018 Male, age 76, both hemispheres 21.2
2693 Female, age 94, both hemispheres 21.1
1990 Female, age 91, right hemisphere 20.2
1850 Male, age 80, both hemispheres 20.1
2250 Female, age 67, right hemisphere 19.2
2532 Female, age 72, left hemisphere 17.9
1933 Female, age 85, both hemispheres 17.0
Perirhinal gyrus
nTPM: 20.3
1847 Female, age 91, left hemisphere 22.2
2521 Female, age 94, right hemisphere 21.5
1794 Male, age 80, right hemisphere 20.1
1841 Female, age 85, right hemisphere 20.1
2848 Male, age 76, right hemisphere 17.8
Subiculum
nTPM: 19.4
2619 Male, age 74, both hemispheres 24.4
1901 Male, age 80, both hemispheres 21.4
2729 Female, age 91, right hemisphere 19.3
2042 Male, age 76, both hemispheres 18.9
1977 Female, age 85, both hemispheres 16.2
2438 Female, age 94, left hemisphere 16.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.9
Samples: 197

Max nTPM: 57.5
Min nTPM: 5.6
Std nTPM: 7.1
Median nTPM: 18.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 57.5
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 40.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 38.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 36.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 34.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 33.4
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 32.1
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 31.6
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 31.3
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 31.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 30.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 12.0
FF:10153-102I9 76 years, female 15.7
FF:10169-103B7 60 years, female 8.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.3
Pig sample Sample description nTPM
Subiculum
nTPM: 10.6
Samples: 4

Max nTPM: 12.9
Min nTPM: 8.6
Sample A Female 12.9
Sample B Female 8.6
Sample C Male 10.4
Sample D Male 10.4
Dorsal hippocampus
nTPM: 7.9
Samples: 4

Max nTPM: 8.5
Min nTPM: 7.6
Sample A Female 8.0
Sample B Female 8.5
Sample C Male 7.6
Sample D Male 7.6
Entorhinal cortex
nTPM: 11.3
Samples: 4

Max nTPM: 12.2
Min nTPM: 10.4
Sample A Female 12.2
Sample B Female 10.4
Sample C Male 11.2
Sample D Male 11.3
Ventral hippocampus
nTPM: 8.4
Samples: 4

Max nTPM: 11.0
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 7.3
Sample C Male 11.0
Sample D Male 8.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 38.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 38.2
Samples: 4

Max nTPM: 41.4
Min nTPM: 34.7
Sample A Male 37.2
Sample B Male 41.4
Sample C Female 34.7
Sample D Female 39.5
Hippocampal formation
nTPM: 29.2
Samples: 4

Max nTPM: 34.0
Min nTPM: 26.5
Sample A Male 28.6
Sample B Male 27.5
Sample C Female 26.5
Sample D Female 34.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
69105744 Antisense, RP_050316_02_C03, Mouse strain C57BL/6J (56 days, male) 2.8

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