MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:59.5 nTPM
HPA Brain:57.5 nTPM
GTEx:59.5 nTPM
FANTOM5:74.1 Scaled Tags Per Million
Pig:63.4 nTPM
Mouse:77.1 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.7
2828 Female, age 72, unknown 39.5
1870 Female, age 42, unknown 30.3
1827 Male, age 72, unknown 29.5
2411 Female, age 72, unknown 27.5
2586 Male, age 75, left hemisphere 24.2
1830 Male, age 51, unknown 22.7
1833 Male, age 53, unknown 21.9
2666 Male, age 74, left hemisphere 21.5
2019 Male, age 18, unknown 21.2
2219 Male, age 76, both hemispheres 18.5
Dorsal raphe nucleus
nTPM: 57.1
1828 Male, age 53, unknown 76.6
2047 Male, age 72, unknown 66.9
2298 Female, age 72, unknown 60.8
2016 Female, age 72, unknown 49.7
2750 Male, age 76, both hemispheres 31.8
Inferior colliculus
nTPM: 57.5
2097 Female, age 72, unknown 87.7
1890 Male, age 53, unknown 70.4
1848 Female, age 42, unknown 41.1
2849 Male, age 72, unknown 31.0
Median raphe nucleus
nTPM: 34.9
2220 Male, age 76, midline 34.9
Periaquaductal grey, anterior
nTPM: 33.5
1795 Male, age 51, unknown 43.1
2502 Female, age 75, unknown 33.9
1947 Male, age 18, unknown 23.4
Periaquaductal grey, dorsal
nTPM: 41.2
2850 Male, age 76, both hemispheres 49.6
1831 Male, age 72, unknown 42.7
1840 Male, age 53, unknown 37.9
2464 Female, age 72, unknown 34.7
Periaquaductal grey, lateral
nTPM: 48.2
2053 Male, age 18, unknown 49.4
2140 Male, age 76, both hemispheres 49.2
2272 Male, age 74, both hemispheres 46.1
Pretectal area
nTPM: 35.8
2273 Male, age 74, both hemispheres 53.1
2224 Female, age 72, unknown 46.3
2667 Female, age 75, unknown 42.6
2316 Male, age 76, right hemisphere 40.6
1816 Male, age 51, unknown 36.8
2407 Male, age 75, both hemispheres 35.4
2825 Male, age 18, unknown 34.4
1944 Female, age 72, unknown 32.2
1817 Female, age 42, unknown 25.9
1815 Male, age 53, unknown 25.6
2007 Male, age 72, unknown 21.2
Red nucleus
nTPM: 26.8
2725 Female, age 75, unknown 35.6
2503 Female, age 72, unknown 33.4
2227 Male, age 72, unknown 32.2
2769 Male, age 72, unknown 31.2
1821 Female, age 72, unknown 28.5
1954 Female, age 42, unknown 26.9
2823 Male, age 76, right hemisphere 25.7
2584 Male, age 75, left hemisphere 22.6
1865 Male, age 51, unknown 22.4
1904 Male, age 53, unknown 22.3
2785 Male, age 18, unknown 21.8
2588 Male, age 74, left hemisphere 18.9
Substantia nigra
nTPM: 36.0
2699 Male, age 18, unknown 57.8
1916 Female, age 42, unknown 40.8
2665 Male, age 74, both hemispheres 40.5
1851 Male, age 51, unknown 38.8
2409 Female, age 72, unknown 35.7
2590 Female, age 75, unknown 35.3
2241 Male, age 72, unknown 31.6
1941 Male, age 53, unknown 28.7
2583 Male, age 75, right hemisphere 25.8
1889 Female, age 72, unknown 24.7
Superior colliculus
nTPM: 32.7
1995 Male, age 72, unknown 45.0
1913 Female, age 42, unknown 42.6
2087 Female, age 72, unknown 37.1
2261 Male, age 18, unknown 37.1
2664 Male, age 75, both hemispheres 34.0
1796 Male, age 53, unknown 33.0
2587 Male, age 74, left hemisphere 29.7
1839 Male, age 51, unknown 27.4
1895 Male, age 76, right hemisphere 23.1
2668 Female, age 75, unknown 17.9
Ventral tegmental area
nTPM: 40.9
1915 Female, age 42, unknown 50.5
2021 Male, age 53, unknown 49.3
1942 Male, age 51, unknown 38.7
2218 Male, age 76, both hemispheres 37.6
2223 Female, age 72, unknown 35.9
2410 Female, age 72, unknown 33.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 59.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.5
Samples: 139

Max nTPM: 153.1
Min nTPM: 5.2
Std nTPM: 29.7
Median nTPM: 50.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 153.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 148.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 135.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 131.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 130.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 127.4
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 120.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 119.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 117.2
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 114.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 114.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 74.1
FF:10158-103A5 76 years, female 74.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 63.4
Samples: 4

Max nTPM: 102.7
Min nTPM: 31.6
Sample A Female 102.7
Sample B Female 44.5
Sample C Male 74.8
Sample D Male 31.6
Midbrain
nTPM: 55.4
Samples: 4

Max nTPM: 71.3
Min nTPM: 41.1
Sample A Female 50.8
Sample B Female 41.1
Sample C Male 71.3
Sample D Male 58.3
Periaqueductal gray
nTPM: 42.4
Samples: 3

Max nTPM: 54.7
Min nTPM: 34.2
Sample B Female 38.3
Sample C Male 54.7
Sample D Male 34.2
Superior colliculi
nTPM: 57.6
Samples: 4

Max nTPM: 79.1
Min nTPM: 41.9
Sample A Female 62.7
Sample B Female 46.8
Sample C Male 79.1
Sample D Male 41.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 77.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 77.1
Samples: 4

Max nTPM: 84.4
Min nTPM: 71.9
Sample A Male 71.9
Sample B Male 77.0
Sample C Female 75.1
Sample D Female 84.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74990508 Antisense, RP_060410_01_B11, Mouse strain C57BL/6J (56 days, male) 1.1
77866852 Antisense, RP_070129_01_E05, Mouse strain C57BL/6J (56 days, male) 0.2

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