MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.4 nTPM
HPA Brain:143.0 nTPM
GTEx:28.4 nTPM
FANTOM5:303.5 Scaled Tags Per Million
Pig:84.0 nTPM
Mouse:50.2 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 143.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.5
2019 Male, age 18, unknown 129.9
2411 Female, age 72, unknown 126.5
2666 Male, age 74, left hemisphere 120.1
1830 Male, age 51, unknown 116.4
1870 Female, age 42, unknown 112.6
1833 Male, age 53, unknown 107.8
2219 Male, age 76, both hemispheres 100.0
2586 Male, age 75, left hemisphere 91.9
1827 Male, age 72, unknown 91.1
2828 Female, age 72, unknown 89.3
Dorsal raphe nucleus
nTPM: 127.3
1828 Male, age 53, unknown 187.2
2047 Male, age 72, unknown 157.6
2750 Male, age 76, both hemispheres 141.1
2016 Female, age 72, unknown 80.6
2298 Female, age 72, unknown 70.1
Inferior colliculus
nTPM: 79.3
1848 Female, age 42, unknown 88.1
1890 Male, age 53, unknown 79.6
2097 Female, age 72, unknown 77.5
2849 Male, age 72, unknown 71.9
Median raphe nucleus
nTPM: 106.5
2220 Male, age 76, midline 106.5
Periaquaductal grey, anterior
nTPM: 83.8
2502 Female, age 75, unknown 89.4
1947 Male, age 18, unknown 82.8
1795 Male, age 51, unknown 79.3
Periaquaductal grey, dorsal
nTPM: 68.3
2464 Female, age 72, unknown 91.5
1831 Male, age 72, unknown 83.6
2850 Male, age 76, both hemispheres 50.7
1840 Male, age 53, unknown 47.4
Periaquaductal grey, lateral
nTPM: 71.1
2053 Male, age 18, unknown 85.9
2272 Male, age 74, both hemispheres 78.5
2140 Male, age 76, both hemispheres 48.8
Pretectal area
nTPM: 90.5
1817 Female, age 42, unknown 120.1
1815 Male, age 53, unknown 117.5
2007 Male, age 72, unknown 115.9
2407 Male, age 75, both hemispheres 96.0
1816 Male, age 51, unknown 91.1
1944 Female, age 72, unknown 89.3
2316 Male, age 76, right hemisphere 87.3
2825 Male, age 18, unknown 81.3
2273 Male, age 74, both hemispheres 73.5
2224 Female, age 72, unknown 70.4
2667 Female, age 75, unknown 52.7
Red nucleus
nTPM: 143.0
2503 Female, age 72, unknown 178.7
2823 Male, age 76, right hemisphere 174.4
2588 Male, age 74, left hemisphere 164.7
1865 Male, age 51, unknown 154.4
1821 Female, age 72, unknown 152.9
1904 Male, age 53, unknown 138.2
1954 Female, age 42, unknown 136.8
2785 Male, age 18, unknown 136.4
2725 Female, age 75, unknown 135.2
2584 Male, age 75, left hemisphere 117.5
2227 Male, age 72, unknown 114.0
2769 Male, age 72, unknown 113.1
Substantia nigra
nTPM: 106.9
2409 Female, age 72, unknown 148.5
2583 Male, age 75, right hemisphere 121.1
1889 Female, age 72, unknown 118.7
2590 Female, age 75, unknown 115.0
1941 Male, age 53, unknown 109.4
2241 Male, age 72, unknown 106.3
1851 Male, age 51, unknown 102.7
1916 Female, age 42, unknown 96.0
2699 Male, age 18, unknown 88.0
2665 Male, age 74, both hemispheres 63.6
Superior colliculus
nTPM: 99.6
2668 Female, age 75, unknown 144.1
2587 Male, age 74, left hemisphere 128.0
1895 Male, age 76, right hemisphere 120.3
1913 Female, age 42, unknown 110.6
1839 Male, age 51, unknown 91.3
2261 Male, age 18, unknown 87.4
1995 Male, age 72, unknown 86.5
2087 Female, age 72, unknown 83.8
1796 Male, age 53, unknown 74.9
2664 Male, age 75, both hemispheres 69.5
Ventral tegmental area
nTPM: 99.4
2410 Female, age 72, unknown 127.0
2223 Female, age 72, unknown 112.6
1915 Female, age 42, unknown 93.1
1942 Male, age 51, unknown 92.1
2218 Male, age 76, both hemispheres 90.7
2021 Male, age 53, unknown 80.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.4
Samples: 139

Max nTPM: 86.0
Min nTPM: 5.6
Std nTPM: 14.1
Median nTPM: 25.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 82.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 71.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 63.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 62.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 62.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 60.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 51.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 50.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 46.9
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 46.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 303.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 303.5
FF:10158-103A5 76 years, female 303.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 84.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 74.8
Samples: 4

Max nTPM: 112.4
Min nTPM: 42.5
Sample A Female 112.4
Sample B Female 54.1
Sample C Male 90.2
Sample D Male 42.5
Midbrain
nTPM: 84.0
Samples: 4

Max nTPM: 123.4
Min nTPM: 61.6
Sample A Female 65.6
Sample B Female 61.6
Sample C Male 123.4
Sample D Male 85.5
Periaqueductal gray
nTPM: 46.9
Samples: 3

Max nTPM: 56.7
Min nTPM: 38.6
Sample B Female 45.5
Sample C Male 56.7
Sample D Male 38.6
Superior colliculi
nTPM: 80.9
Samples: 4

Max nTPM: 104.5
Min nTPM: 69.4
Sample A Female 78.1
Sample B Female 69.4
Sample C Male 104.5
Sample D Male 71.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.2
Samples: 4

Max nTPM: 54.5
Min nTPM: 42.1
Sample A Male 42.1
Sample B Male 54.5
Sample C Female 53.2
Sample D Female 51.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
71809205 Antisense, RP_051005_01_G04, Mouse strain C57BL/6J (56 days, male) 6.5
74363335 Antisense, RP_051005_01_G04, Mouse strain C57BL/6J (56 days, male) 3.7
77874616 Antisense, RP_070219_02_B01, Mouse strain C57BL/6J (56 days, male) 0.8
58 Antisense, RP_Baylor_103297, Mouse strain C57BL/6J (56 days, male) 0.4
57 Antisense, RP_Baylor_103297, Mouse strain C57BL/6J (56 days, male) 0.1
59 Sense, RPS_Baylor_37104, Mouse strain C57BL/6J (56 days, male) 0.0

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