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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
158.9
nTPM
HPA Brain:
637.8
nTPM
GTEx:
158.9
nTPM
FANTOM5:
224.5
Scaled Tags Per Million
Pig:
324.8
nTPM
Mouse:
592.4
nTPM
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA049910
Antibody CAB005920
Glial cells
Not detected
Low
Neuronal cells
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM
637.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 371.7
1898
Male, age 80, left hemisphere
517.4
2621
Female, age 67, right hemisphere
474.4
1855
Male, age 76, left hemisphere
403.4
2148
Female, age 91, left hemisphere
395.0
1911
Female, age 85, right hemisphere
231.9
2529
Female, age 94, left hemisphere
208.1
Dentate gyrus nTPM: 430.8
1927
Female, age 91, both hemispheres
580.9
2531
Female, age 67, both hemispheres
454.7
2530
Female, age 94, left hemisphere
444.1
2010
Male, age 76, both hemispheres
385.1
2528
Male, age 74, both hemispheres
365.9
2246
Female, age 85, both hemispheres
354.0
Entorhinal gyrus nTPM: 450.7
2613
Female, age 94, left hemisphere
642.7
2764
Male, age 80, right hemisphere
584.6
1938
Female, age 85, left hemisphere
429.0
2686
Male, age 75, right hemisphere
427.4
1787
Male, age 76, left hemisphere
412.5
2117
Female, age 91, right hemisphere
207.9
Hippocampus, CA1 nTPM: 441.8
2749
Male, age 80, left hemisphere
679.3
2045
Male, age 76, both hemispheres
407.6
1873
Female, age 85, both hemispheres
398.4
2527
Male, age 74, both hemispheres
388.2
2082
Female, age 91, right hemisphere
335.7
Hippocampus, CA2 nTPM: 393.5
1892
Male, age 76, both hemispheres
482.4
1963
Male, age 80, left hemisphere
479.1
2437
Female, age 94, left hemisphere
413.3
1940
Female, age 85, left hemisphere
385.7
2113
Female, age 91, right hemisphere
312.7
2249
Male, age 74, both hemispheres
287.8
Hippocampus, CA3 nTPM: 432.0
2620
Female, age 94, left hemisphere
622.9
2861
Female, age 67, both hemispheres
520.3
2137
Male, age 80, left hemisphere
514.1
1867
Male, age 76, both hemispheres
383.0
2436
Male, age 74, both hemispheres
295.2
1891
Female, age 85, both hemispheres
256.3
Parahippocampal cortex nTPM: 469.1
2245
Female, age 91, both hemispheres
581.8
1990
Female, age 91, right hemisphere
556.3
1850
Male, age 80, both hemispheres
553.7
2693
Female, age 94, both hemispheres
541.6
2622
Female, age 67, right hemisphere
503.0
1933
Female, age 85, both hemispheres
433.1
2250
Female, age 67, right hemisphere
424.5
2532
Female, age 72, left hemisphere
423.8
2018
Male, age 76, both hemispheres
355.1
2692
Male, age 74, both hemispheres
318.4
Perirhinal gyrus nTPM: 637.8
1847
Female, age 91, left hemisphere
867.9
1794
Male, age 80, right hemisphere
683.5
2521
Female, age 94, right hemisphere
664.4
1841
Female, age 85, right hemisphere
515.0
2848
Male, age 76, right hemisphere
458.1
Subiculum nTPM: 323.8
1977
Female, age 85, both hemispheres
391.4
2438
Female, age 94, left hemisphere
356.7
1901
Male, age 80, both hemispheres
354.3
2619
Male, age 74, both hemispheres
352.0
2729
Female, age 91, right hemisphere
263.4
2042
Male, age 76, both hemispheres
225.0
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
158.9
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 158.9
Samples: 197
Max nTPM: 523.4
Min nTPM: 1.6
Std nTPM: 111.0
Median nTPM: 141.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
523.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
519.3
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
473.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
465.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
402.8
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
390.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
382.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
367.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
353.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
351.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
346.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
345.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
344.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
343.4
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
343.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
339.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
325.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
323.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
313.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
311.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
307.3
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
303.1
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
302.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
298.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
297.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
292.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
286.4
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
285.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
281.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
281.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
274.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
273.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
273.0
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
267.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
266.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
264.0
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
263.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
260.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
259.9
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
252.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
250.5
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
250.3
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
247.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
246.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
244.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
236.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
235.7
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
235.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
230.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
229.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
224.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
220.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
220.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
219.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
215.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
215.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
209.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
208.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
208.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
208.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
206.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
203.9
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
203.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
203.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
202.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
200.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
199.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
199.5
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
199.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
198.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
194.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
193.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
193.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
192.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
192.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
191.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
187.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
184.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
184.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
184.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
180.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
176.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
175.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
175.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
165.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
164.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
163.3
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
158.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
156.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
156.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
154.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
153.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
152.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
150.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
148.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
144.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
143.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
143.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
141.7
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
139.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
136.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
135.9
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
131.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
130.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
130.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
128.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
127.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
127.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
124.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
120.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
120.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
118.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
117.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
117.6
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
117.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
114.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
113.6
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
111.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
109.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
104.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
102.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
100.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
98.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
97.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
96.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
95.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
95.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
94.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
94.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
94.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
91.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
91.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
90.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
86.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
83.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
81.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
81.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
81.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
79.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
79.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
77.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
76.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
76.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
74.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
73.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
73.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
71.2
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
70.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
65.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
61.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
59.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
59.2
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
58.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
57.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
56.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
55.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
55.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
53.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
53.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
53.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
51.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
44.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
43.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
42.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
41.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
41.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
41.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
36.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
35.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
35.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
35.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
35.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
34.9
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
33.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
32.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
31.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
31.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
30.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
30.1
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
27.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
25.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
24.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
22.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
19.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
18.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
18.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
16.9
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
16.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
15.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
14.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
12.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
11.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
8.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
8.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
7.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
3.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
1.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.