MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:22.4 nTPM
HPA Brain:20.9 nTPM
GTEx:22.4 nTPM
FANTOM5:53.8 Scaled Tags Per Million
Pig:34.3 nTPM
Mouse:15.3 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.5
1870 Female, age 42, unknown 22.3
2828 Female, age 72, unknown 20.0
2586 Male, age 75, left hemisphere 19.5
1830 Male, age 51, unknown 18.6
1833 Male, age 53, unknown 18.2
2019 Male, age 18, unknown 16.6
2219 Male, age 76, both hemispheres 15.9
2666 Male, age 74, left hemisphere 15.1
1827 Male, age 72, unknown 15.0
2411 Female, age 72, unknown 14.3
Dorsal raphe nucleus
nTPM: 16.8
2016 Female, age 72, unknown 21.2
1828 Male, age 53, unknown 17.3
2298 Female, age 72, unknown 16.7
2750 Male, age 76, both hemispheres 16.5
2047 Male, age 72, unknown 12.3
Inferior colliculus
nTPM: 18.3
2849 Male, age 72, unknown 20.1
1848 Female, age 42, unknown 19.0
1890 Male, age 53, unknown 18.0
2097 Female, age 72, unknown 16.2
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Periaquaductal grey, anterior
nTPM: 16.2
2502 Female, age 75, unknown 19.8
1947 Male, age 18, unknown 14.6
1795 Male, age 51, unknown 14.1
Periaquaductal grey, dorsal
nTPM: 18.4
2850 Male, age 76, both hemispheres 23.6
1840 Male, age 53, unknown 16.8
2464 Female, age 72, unknown 16.7
1831 Male, age 72, unknown 16.5
Periaquaductal grey, lateral
nTPM: 16.5
2140 Male, age 76, both hemispheres 18.7
2053 Male, age 18, unknown 16.2
2272 Male, age 74, both hemispheres 14.6
Pretectal area
nTPM: 16.5
2316 Male, age 76, right hemisphere 18.5
1815 Male, age 53, unknown 18.4
2825 Male, age 18, unknown 18.1
1817 Female, age 42, unknown 17.9
2273 Male, age 74, both hemispheres 17.1
2667 Female, age 75, unknown 16.7
2007 Male, age 72, unknown 15.7
2224 Female, age 72, unknown 15.4
2407 Male, age 75, both hemispheres 15.3
1944 Female, age 72, unknown 14.9
1816 Male, age 51, unknown 13.8
Red nucleus
nTPM: 20.9
1904 Male, age 53, unknown 25.6
1954 Female, age 42, unknown 24.7
1821 Female, age 72, unknown 23.8
1865 Male, age 51, unknown 23.3
2227 Male, age 72, unknown 23.2
2769 Male, age 72, unknown 22.8
2823 Male, age 76, right hemisphere 21.9
2503 Female, age 72, unknown 20.8
2785 Male, age 18, unknown 18.6
2725 Female, age 75, unknown 17.1
2584 Male, age 75, left hemisphere 14.7
2588 Male, age 74, left hemisphere 14.0
Substantia nigra
nTPM: 16.2
2699 Male, age 18, unknown 23.3
1851 Male, age 51, unknown 17.4
1916 Female, age 42, unknown 16.6
1889 Female, age 72, unknown 16.1
2409 Female, age 72, unknown 16.1
2583 Male, age 75, right hemisphere 15.4
2665 Male, age 74, both hemispheres 15.3
2241 Male, age 72, unknown 15.2
2590 Female, age 75, unknown 13.8
1941 Male, age 53, unknown 13.2
Superior colliculus
nTPM: 17.7
1995 Male, age 72, unknown 23.7
1913 Female, age 42, unknown 23.6
2668 Female, age 75, unknown 19.2
1839 Male, age 51, unknown 17.7
2587 Male, age 74, left hemisphere 17.2
2664 Male, age 75, both hemispheres 17.0
1796 Male, age 53, unknown 15.7
1895 Male, age 76, right hemisphere 15.4
2261 Male, age 18, unknown 13.9
2087 Female, age 72, unknown 13.2
Ventral tegmental area
nTPM: 16.4
2223 Female, age 72, unknown 19.1
2410 Female, age 72, unknown 17.1
1915 Female, age 42, unknown 16.8
1942 Male, age 51, unknown 16.3
2021 Male, age 53, unknown 15.8
2218 Male, age 76, both hemispheres 13.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 22.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 22.4
Samples: 139

Max nTPM: 35.6
Min nTPM: 8.7
Std nTPM: 5.4
Median nTPM: 22.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 33.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 32.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 32.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 32.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 31.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 31.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 30.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.8
FF:10158-103A5 76 years, female 53.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.6
Samples: 4

Max nTPM: 40.2
Min nTPM: 29.1
Sample A Female 31.4
Sample B Female 29.1
Sample C Male 29.8
Sample D Male 40.2
Midbrain
nTPM: 34.3
Samples: 4

Max nTPM: 56.1
Min nTPM: 21.9
Sample A Female 56.1
Sample B Female 33.7
Sample C Male 21.9
Sample D Male 25.5
Periaqueductal gray
nTPM: 29.6
Samples: 3

Max nTPM: 31.0
Min nTPM: 27.9
Sample B Female 31.0
Sample C Male 29.8
Sample D Male 27.9
Superior colliculi
nTPM: 28.9
Samples: 4

Max nTPM: 30.2
Min nTPM: 26.5
Sample A Female 30.2
Sample B Female 26.5
Sample C Male 28.7
Sample D Male 30.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.3
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.4
Sample A Male 17.3
Sample B Male 15.3
Sample C Female 13.4
Sample D Female 15.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
74359724 Antisense, RP_060207_01_B02, Mouse strain C57BL/6J (56 days, male) 1.1

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