MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.1 nTPM
HPA Brain:72.0 nTPM
GTEx:14.1 nTPM
FANTOM5:48.1 Scaled Tags Per Million
Pig:27.7 nTPM
Mouse:17.4 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
1830 Male, age 51, unknown 66.3
1833 Male, age 53, unknown 62.6
1870 Female, age 42, unknown 62.3
2019 Male, age 18, unknown 59.8
2411 Female, age 72, unknown 59.0
2219 Male, age 76, both hemispheres 55.8
1827 Male, age 72, unknown 55.1
2828 Female, age 72, unknown 54.2
2586 Male, age 75, left hemisphere 52.1
2666 Male, age 74, left hemisphere 51.8
Dorsal raphe nucleus
nTPM: 63.3
2016 Female, age 72, unknown 79.2
2298 Female, age 72, unknown 66.1
1828 Male, age 53, unknown 61.8
2750 Male, age 76, both hemispheres 56.3
2047 Male, age 72, unknown 52.8
Inferior colliculus
nTPM: 58.7
2849 Male, age 72, unknown 65.2
1848 Female, age 42, unknown 58.7
1890 Male, age 53, unknown 57.7
2097 Female, age 72, unknown 53.4
Median raphe nucleus
nTPM: 53.9
2220 Male, age 76, midline 53.9
Periaquaductal grey, anterior
nTPM: 54.7
1795 Male, age 51, unknown 59.2
2502 Female, age 75, unknown 54.5
1947 Male, age 18, unknown 50.5
Periaquaductal grey, dorsal
nTPM: 69.5
2850 Male, age 76, both hemispheres 85.4
1840 Male, age 53, unknown 69.2
1831 Male, age 72, unknown 63.4
2464 Female, age 72, unknown 60.0
Periaquaductal grey, lateral
nTPM: 72.0
2272 Male, age 74, both hemispheres 79.0
2140 Male, age 76, both hemispheres 77.8
2053 Male, age 18, unknown 59.2
Pretectal area
nTPM: 57.8
2273 Male, age 74, both hemispheres 82.4
2224 Female, age 72, unknown 67.6
2825 Male, age 18, unknown 61.0
1815 Male, age 53, unknown 59.2
2316 Male, age 76, right hemisphere 57.5
2407 Male, age 75, both hemispheres 56.2
2667 Female, age 75, unknown 55.0
1817 Female, age 42, unknown 52.2
2007 Male, age 72, unknown 51.9
1944 Female, age 72, unknown 46.4
1816 Male, age 51, unknown 46.2
Red nucleus
nTPM: 62.2
2785 Male, age 18, unknown 67.0
1904 Male, age 53, unknown 66.7
2503 Female, age 72, unknown 66.5
2588 Male, age 74, left hemisphere 66.0
2227 Male, age 72, unknown 65.1
2769 Male, age 72, unknown 64.8
1865 Male, age 51, unknown 63.1
1821 Female, age 72, unknown 62.8
1954 Female, age 42, unknown 59.2
2725 Female, age 75, unknown 58.1
2823 Male, age 76, right hemisphere 57.5
2584 Male, age 75, left hemisphere 49.1
Substantia nigra
nTPM: 58.2
2699 Male, age 18, unknown 72.0
2590 Female, age 75, unknown 61.5
1851 Male, age 51, unknown 58.5
2241 Male, age 72, unknown 57.8
1889 Female, age 72, unknown 57.7
2409 Female, age 72, unknown 57.5
2583 Male, age 75, right hemisphere 55.7
1941 Male, age 53, unknown 55.2
1916 Female, age 42, unknown 53.7
2665 Male, age 74, both hemispheres 52.6
Superior colliculus
nTPM: 59.6
1995 Male, age 72, unknown 72.0
2587 Male, age 74, left hemisphere 68.6
1913 Female, age 42, unknown 67.2
1895 Male, age 76, right hemisphere 63.1
2668 Female, age 75, unknown 61.7
1839 Male, age 51, unknown 59.9
1796 Male, age 53, unknown 54.3
2261 Male, age 18, unknown 51.9
2664 Male, age 75, both hemispheres 51.9
2087 Female, age 72, unknown 46.0
Ventral tegmental area
nTPM: 56.7
2223 Female, age 72, unknown 60.8
1915 Female, age 42, unknown 58.1
2410 Female, age 72, unknown 56.9
2218 Male, age 76, both hemispheres 55.8
2021 Male, age 53, unknown 54.8
1942 Male, age 51, unknown 53.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.1
Samples: 139

Max nTPM: 40.6
Min nTPM: 0.6
Std nTPM: 5.6
Median nTPM: 13.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 40.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 28.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 25.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 24.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 24.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 23.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 22.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 22.1
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 21.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.1
FF:10158-103A5 76 years, female 48.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.4
Samples: 4

Max nTPM: 30.6
Min nTPM: 20.6
Sample A Female 21.6
Sample B Female 28.8
Sample C Male 20.6
Sample D Male 30.6
Midbrain
nTPM: 26.6
Samples: 4

Max nTPM: 30.8
Min nTPM: 21.6
Sample A Female 30.8
Sample B Female 25.8
Sample C Male 28.2
Sample D Male 21.6
Periaqueductal gray
nTPM: 25.0
Samples: 3

Max nTPM: 26.8
Min nTPM: 21.6
Sample B Female 26.7
Sample C Male 21.6
Sample D Male 26.8
Superior colliculi
nTPM: 27.7
Samples: 4

Max nTPM: 38.7
Min nTPM: 23.2
Sample A Female 23.2
Sample B Female 38.7
Sample C Male 25.2
Sample D Male 23.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 20.0
Min nTPM: 15.1
Sample A Male 15.1
Sample B Male 17.4
Sample C Female 17.2
Sample D Female 20.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
71020764 Antisense, RP_050505_01_F08, Mouse strain C57BL/6J (56 days, male) 1.4

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