MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA Brain:71.8 nTPM
GTEx:35.2 nTPM
FANTOM5:105.4 Scaled Tags Per Million
Pig:45.5 nTPM
Mouse:55.7 nTPM
Allen mouse:8.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 71.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 69.0
2666 Male, age 74, left hemisphere 78.9
2586 Male, age 75, left hemisphere 75.8
1870 Female, age 42, unknown 72.7
1827 Male, age 72, unknown 69.1
2219 Male, age 76, both hemispheres 68.1
1833 Male, age 53, unknown 66.8
2019 Male, age 18, unknown 66.2
2828 Female, age 72, unknown 66.2
1830 Male, age 51, unknown 65.4
2411 Female, age 72, unknown 60.9
Dorsal raphe nucleus
nTPM: 59.6
2016 Female, age 72, unknown 66.2
1828 Male, age 53, unknown 62.0
2750 Male, age 76, both hemispheres 59.5
2047 Male, age 72, unknown 58.2
2298 Female, age 72, unknown 51.9
Inferior colliculus
nTPM: 65.7
2849 Male, age 72, unknown 76.4
1848 Female, age 42, unknown 66.6
1890 Male, age 53, unknown 65.9
2097 Female, age 72, unknown 54.0
Median raphe nucleus
nTPM: 69.1
2220 Male, age 76, midline 69.1
Periaquaductal grey, anterior
nTPM: 63.7
1947 Male, age 18, unknown 64.9
1795 Male, age 51, unknown 63.5
2502 Female, age 75, unknown 62.8
Periaquaductal grey, dorsal
nTPM: 67.6
2850 Male, age 76, both hemispheres 77.4
1831 Male, age 72, unknown 69.2
1840 Male, age 53, unknown 63.3
2464 Female, age 72, unknown 60.3
Periaquaductal grey, lateral
nTPM: 61.6
2140 Male, age 76, both hemispheres 65.0
2053 Male, age 18, unknown 61.9
2272 Male, age 74, both hemispheres 57.7
Pretectal area
nTPM: 66.8
1815 Male, age 53, unknown 74.1
1816 Male, age 51, unknown 74.0
1817 Female, age 42, unknown 73.9
2407 Male, age 75, both hemispheres 71.3
1944 Female, age 72, unknown 71.1
2007 Male, age 72, unknown 70.2
2825 Male, age 18, unknown 64.9
2667 Female, age 75, unknown 63.1
2224 Female, age 72, unknown 58.6
2273 Male, age 74, both hemispheres 58.5
2316 Male, age 76, right hemisphere 55.4
Red nucleus
nTPM: 71.8
2503 Female, age 72, unknown 86.7
2725 Female, age 75, unknown 77.6
1865 Male, age 51, unknown 77.4
2588 Male, age 74, left hemisphere 76.3
2584 Male, age 75, left hemisphere 70.8
1821 Female, age 72, unknown 70.5
1904 Male, age 53, unknown 69.4
1954 Female, age 42, unknown 67.7
2785 Male, age 18, unknown 67.7
2227 Male, age 72, unknown 67.0
2769 Male, age 72, unknown 66.2
2823 Male, age 76, right hemisphere 64.0
Substantia nigra
nTPM: 66.8
2699 Male, age 18, unknown 78.7
2665 Male, age 74, both hemispheres 74.5
2590 Female, age 75, unknown 67.5
1889 Female, age 72, unknown 66.5
1941 Male, age 53, unknown 65.9
1916 Female, age 42, unknown 65.4
2583 Male, age 75, right hemisphere 65.2
2409 Female, age 72, unknown 64.1
1851 Male, age 51, unknown 63.4
2241 Male, age 72, unknown 56.6
Superior colliculus
nTPM: 66.3
1913 Female, age 42, unknown 74.5
2587 Male, age 74, left hemisphere 72.8
1995 Male, age 72, unknown 71.5
2664 Male, age 75, both hemispheres 66.7
1839 Male, age 51, unknown 64.8
2668 Female, age 75, unknown 64.2
2087 Female, age 72, unknown 63.5
1796 Male, age 53, unknown 63.1
2261 Male, age 18, unknown 61.3
1895 Male, age 76, right hemisphere 60.3
Ventral tegmental area
nTPM: 64.3
2223 Female, age 72, unknown 72.5
2218 Male, age 76, both hemispheres 67.0
2021 Male, age 53, unknown 65.1
1915 Female, age 42, unknown 61.5
1942 Male, age 51, unknown 60.3
2410 Female, age 72, unknown 59.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.2
Samples: 139

Max nTPM: 72.9
Min nTPM: 17.5
Std nTPM: 8.2
Median nTPM: 33.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 72.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 61.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 53.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 52.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 51.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 50.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 48.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 47.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 47.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 47.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.4
FF:10158-103A5 76 years, female 105.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 45.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 42.3
Samples: 4

Max nTPM: 44.7
Min nTPM: 40.1
Sample A Female 44.7
Sample B Female 40.1
Sample C Male 44.2
Sample D Male 40.2
Midbrain
nTPM: 45.5
Samples: 4

Max nTPM: 54.9
Min nTPM: 36.7
Sample A Female 54.9
Sample B Female 41.5
Sample C Male 48.8
Sample D Male 36.7
Periaqueductal gray
nTPM: 38.2
Samples: 3

Max nTPM: 42.1
Min nTPM: 34.8
Sample B Female 37.7
Sample C Male 42.1
Sample D Male 34.8
Superior colliculi
nTPM: 43.6
Samples: 4

Max nTPM: 46.3
Min nTPM: 40.3
Sample A Female 45.7
Sample B Female 40.3
Sample C Male 46.3
Sample D Male 42.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 55.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.7
Samples: 4

Max nTPM: 62.2
Min nTPM: 48.9
Sample A Male 48.9
Sample B Male 55.9
Sample C Female 62.2
Sample D Female 55.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.3
69671947 Antisense, RP_050428_02_F09, Mouse strain C57BL/6J (56 days, male) 8.3

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