MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:13.5 nTPM
GTEx:12.5 nTPM
FANTOM5:34.2 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:46.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 13.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
1833 Male, age 53, unknown 13.1
1870 Female, age 42, unknown 12.9
2411 Female, age 72, unknown 12.6
1830 Male, age 51, unknown 12.0
2219 Male, age 76, both hemispheres 11.5
1827 Male, age 72, unknown 10.5
2828 Female, age 72, unknown 10.4
2019 Male, age 18, unknown 10.3
2666 Male, age 74, left hemisphere 8.9
2586 Male, age 75, left hemisphere 7.3
Dorsal raphe nucleus
nTPM: 11.0
2750 Male, age 76, both hemispheres 13.9
1828 Male, age 53, unknown 11.1
2047 Male, age 72, unknown 10.2
2016 Female, age 72, unknown 10.1
2298 Female, age 72, unknown 9.6
Inferior colliculus
nTPM: 10.2
1890 Male, age 53, unknown 10.5
2849 Male, age 72, unknown 10.3
2097 Female, age 72, unknown 10.1
1848 Female, age 42, unknown 9.9
Median raphe nucleus
nTPM: 10.6
2220 Male, age 76, midline 10.6
Periaquaductal grey, anterior
nTPM: 10.1
2502 Female, age 75, unknown 10.4
1947 Male, age 18, unknown 10.2
1795 Male, age 51, unknown 9.8
Periaquaductal grey, dorsal
nTPM: 9.6
2850 Male, age 76, both hemispheres 10.9
2464 Female, age 72, unknown 10.2
1831 Male, age 72, unknown 9.5
1840 Male, age 53, unknown 7.9
Periaquaductal grey, lateral
nTPM: 11.4
2272 Male, age 74, both hemispheres 11.6
2140 Male, age 76, both hemispheres 11.4
2053 Male, age 18, unknown 11.3
Pretectal area
nTPM: 10.1
2316 Male, age 76, right hemisphere 14.2
2273 Male, age 74, both hemispheres 11.2
2224 Female, age 72, unknown 10.7
2667 Female, age 75, unknown 10.6
2825 Male, age 18, unknown 10.6
2007 Male, age 72, unknown 10.4
1815 Male, age 53, unknown 10.0
1817 Female, age 42, unknown 9.5
2407 Male, age 75, both hemispheres 8.6
1816 Male, age 51, unknown 7.6
1944 Female, age 72, unknown 7.6
Red nucleus
nTPM: 13.5
2769 Male, age 72, unknown 16.1
1865 Male, age 51, unknown 15.5
1904 Male, age 53, unknown 15.2
2823 Male, age 76, right hemisphere 15.2
2503 Female, age 72, unknown 14.4
1821 Female, age 72, unknown 14.3
1954 Female, age 42, unknown 13.8
2227 Male, age 72, unknown 13.5
2785 Male, age 18, unknown 12.9
2588 Male, age 74, left hemisphere 11.1
2725 Female, age 75, unknown 10.5
2584 Male, age 75, left hemisphere 9.1
Substantia nigra
nTPM: 9.6
2590 Female, age 75, unknown 12.3
2409 Female, age 72, unknown 10.8
2699 Male, age 18, unknown 10.7
1889 Female, age 72, unknown 10.5
1851 Male, age 51, unknown 9.8
2583 Male, age 75, right hemisphere 9.6
2665 Male, age 74, both hemispheres 9.5
1941 Male, age 53, unknown 8.4
1916 Female, age 42, unknown 7.9
2241 Male, age 72, unknown 6.5
Superior colliculus
nTPM: 10.8
1913 Female, age 42, unknown 13.3
1995 Male, age 72, unknown 13.3
1839 Male, age 51, unknown 12.5
1895 Male, age 76, right hemisphere 12.0
2587 Male, age 74, left hemisphere 10.7
1796 Male, age 53, unknown 10.4
2261 Male, age 18, unknown 9.7
2668 Female, age 75, unknown 9.6
2087 Female, age 72, unknown 8.9
2664 Male, age 75, both hemispheres 8.1
Ventral tegmental area
nTPM: 11.1
2223 Female, age 72, unknown 13.1
2218 Male, age 76, both hemispheres 12.0
2410 Female, age 72, unknown 11.2
1915 Female, age 42, unknown 10.7
2021 Male, age 53, unknown 10.4
1942 Male, age 51, unknown 9.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.5
Samples: 139

Max nTPM: 21.0
Min nTPM: 5.1
Std nTPM: 3.1
Median nTPM: 12.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 21.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 20.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 20.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 19.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 19.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 19.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 19.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 18.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 18.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 17.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.2
FF:10158-103A5 76 years, female 34.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 15.8
Sample A Female 18.3
Sample B Female 18.9
Sample C Male 15.8
Sample D Male 20.5
Midbrain
nTPM: 17.2
Samples: 4

Max nTPM: 21.3
Min nTPM: 14.7
Sample A Female 21.3
Sample B Female 17.0
Sample C Male 15.7
Sample D Male 14.7
Periaqueductal gray
nTPM: 16.4
Samples: 3

Max nTPM: 16.9
Min nTPM: 16.0
Sample B Female 16.0
Sample C Male 16.2
Sample D Male 16.9
Superior colliculi
nTPM: 19.8
Samples: 4

Max nTPM: 26.0
Min nTPM: 17.4
Sample A Female 17.8
Sample B Female 26.0
Sample C Male 18.1
Sample D Male 17.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 46.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 46.7
Samples: 4

Max nTPM: 49.0
Min nTPM: 45.1
Sample A Male 46.0
Sample B Male 45.1
Sample C Female 46.6
Sample D Female 49.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
72283767 Antisense, RP_051019_02_B03, Mouse strain C57BL/6J (56 days, male) 0.0

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