MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.8 nTPM
HPA Brain:72.2 nTPM
GTEx:33.8 nTPM
FANTOM5:65.4 Scaled Tags Per Million
Pig:73.6 nTPM
Mouse:171.2 nTPM
Allen mouse:5.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 72.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.4
2019 Male, age 18, unknown 71.8
1827 Male, age 72, unknown 68.4
2219 Male, age 76, both hemispheres 57.3
2586 Male, age 75, left hemisphere 56.5
2411 Female, age 72, unknown 53.0
2666 Male, age 74, left hemisphere 51.9
2828 Female, age 72, unknown 49.3
1870 Female, age 42, unknown 48.9
1830 Male, age 51, unknown 44.0
1833 Male, age 53, unknown 43.2
Dorsal raphe nucleus
nTPM: 49.1
2298 Female, age 72, unknown 58.5
2047 Male, age 72, unknown 50.7
1828 Male, age 53, unknown 49.7
2750 Male, age 76, both hemispheres 45.8
2016 Female, age 72, unknown 40.7
Inferior colliculus
nTPM: 60.4
2097 Female, age 72, unknown 75.5
1848 Female, age 42, unknown 58.1
1890 Male, age 53, unknown 57.7
2849 Male, age 72, unknown 50.4
Median raphe nucleus
nTPM: 50.9
2220 Male, age 76, midline 50.9
Periaquaductal grey, anterior
nTPM: 59.0
1795 Male, age 51, unknown 60.2
2502 Female, age 75, unknown 58.8
1947 Male, age 18, unknown 58.0
Periaquaductal grey, dorsal
nTPM: 50.1
1831 Male, age 72, unknown 57.0
1840 Male, age 53, unknown 52.7
2464 Female, age 72, unknown 48.2
2850 Male, age 76, both hemispheres 42.3
Periaquaductal grey, lateral
nTPM: 50.7
2272 Male, age 74, both hemispheres 59.9
2053 Male, age 18, unknown 51.5
2140 Male, age 76, both hemispheres 40.6
Pretectal area
nTPM: 72.2
1816 Male, age 51, unknown 111.2
2007 Male, age 72, unknown 95.7
1944 Female, age 72, unknown 92.7
1817 Female, age 42, unknown 92.2
1815 Male, age 53, unknown 82.9
2273 Male, age 74, both hemispheres 62.7
2667 Female, age 75, unknown 60.1
2224 Female, age 72, unknown 55.7
2407 Male, age 75, both hemispheres 51.4
2825 Male, age 18, unknown 46.4
2316 Male, age 76, right hemisphere 43.0
Red nucleus
nTPM: 47.0
2785 Male, age 18, unknown 67.3
2725 Female, age 75, unknown 55.1
2584 Male, age 75, left hemisphere 54.6
1821 Female, age 72, unknown 52.7
2588 Male, age 74, left hemisphere 52.0
1954 Female, age 42, unknown 44.7
2503 Female, age 72, unknown 43.1
1865 Male, age 51, unknown 42.2
2823 Male, age 76, right hemisphere 40.3
1904 Male, age 53, unknown 37.6
2769 Male, age 72, unknown 37.5
2227 Male, age 72, unknown 37.3
Substantia nigra
nTPM: 59.8
1889 Female, age 72, unknown 76.1
1941 Male, age 53, unknown 74.3
1916 Female, age 42, unknown 65.3
2241 Male, age 72, unknown 61.8
1851 Male, age 51, unknown 58.0
2409 Female, age 72, unknown 57.4
2583 Male, age 75, right hemisphere 57.2
2590 Female, age 75, unknown 55.7
2665 Male, age 74, both hemispheres 55.5
2699 Male, age 18, unknown 36.2
Superior colliculus
nTPM: 60.5
2087 Female, age 72, unknown 79.0
2261 Male, age 18, unknown 73.0
1796 Male, age 53, unknown 65.9
1895 Male, age 76, right hemisphere 61.0
2668 Female, age 75, unknown 61.0
2587 Male, age 74, left hemisphere 56.4
1839 Male, age 51, unknown 54.2
2664 Male, age 75, both hemispheres 53.1
1913 Female, age 42, unknown 52.9
1995 Male, age 72, unknown 48.8
Ventral tegmental area
nTPM: 51.4
2410 Female, age 72, unknown 59.6
2218 Male, age 76, both hemispheres 54.1
2223 Female, age 72, unknown 52.5
1915 Female, age 42, unknown 51.5
1942 Male, age 51, unknown 46.2
2021 Male, age 53, unknown 44.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.8
Samples: 139

Max nTPM: 117.1
Min nTPM: 14.4
Std nTPM: 16.0
Median nTPM: 29.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 117.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 99.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 91.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 80.8
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 69.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 66.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 63.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 58.1
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 53.4
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 52.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.4
FF:10158-103A5 76 years, female 65.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.1
Samples: 4

Max nTPM: 70.6
Min nTPM: 35.8
Sample A Female 70.6
Sample B Female 48.7
Sample C Male 57.3
Sample D Male 35.8
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 106.6
Min nTPM: 53.2
Sample A Female 53.2
Sample B Female 55.9
Sample C Male 106.6
Sample D Male 77.6
Periaqueductal gray
nTPM: 49.7
Samples: 3

Max nTPM: 56.5
Min nTPM: 45.9
Sample B Female 46.8
Sample C Male 56.5
Sample D Male 45.9
Superior colliculi
nTPM: 73.6
Samples: 4

Max nTPM: 98.4
Min nTPM: 51.7
Sample A Female 75.1
Sample B Female 51.7
Sample C Male 98.4
Sample D Male 69.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 171.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 171.2
Samples: 4

Max nTPM: 177.2
Min nTPM: 163.8
Sample A Male 163.8
Sample B Male 177.2
Sample C Female 176.7
Sample D Female 167.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.3
71325360 Antisense, RP_050825_02_F12, Mouse strain C57BL/6J (56 days, male) 5.3

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