MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:119.7 nTPM
HPA Brain:66.4 nTPM
GTEx:119.7 nTPM
FANTOM5:37.3 Scaled Tags Per Million
Pig:32.1 nTPM
Mouse:12.9 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.7
2586 Male, age 75, left hemisphere 90.6
2666 Male, age 74, left hemisphere 75.9
2828 Female, age 72, unknown 68.3
1870 Female, age 42, unknown 54.8
1830 Male, age 51, unknown 54.6
1833 Male, age 53, unknown 54.2
2411 Female, age 72, unknown 52.9
1827 Male, age 72, unknown 47.9
2019 Male, age 18, unknown 47.2
2219 Male, age 76, both hemispheres 41.0
Dorsal raphe nucleus
nTPM: 48.0
2016 Female, age 72, unknown 57.5
1828 Male, age 53, unknown 50.7
2750 Male, age 76, both hemispheres 49.9
2047 Male, age 72, unknown 42.4
2298 Female, age 72, unknown 39.7
Inferior colliculus
nTPM: 45.8
2849 Male, age 72, unknown 49.0
1890 Male, age 53, unknown 48.7
1848 Female, age 42, unknown 45.5
2097 Female, age 72, unknown 39.9
Median raphe nucleus
nTPM: 36.8
2220 Male, age 76, midline 36.8
Periaquaductal grey, anterior
nTPM: 51.2
2502 Female, age 75, unknown 60.5
1795 Male, age 51, unknown 50.4
1947 Male, age 18, unknown 42.8
Periaquaductal grey, dorsal
nTPM: 44.7
2464 Female, age 72, unknown 52.9
1831 Male, age 72, unknown 45.4
1840 Male, age 53, unknown 44.4
2850 Male, age 76, both hemispheres 36.3
Periaquaductal grey, lateral
nTPM: 46.4
2053 Male, age 18, unknown 55.4
2140 Male, age 76, both hemispheres 45.8
2272 Male, age 74, both hemispheres 38.0
Pretectal area
nTPM: 44.7
2825 Male, age 18, unknown 54.9
1815 Male, age 53, unknown 52.1
2407 Male, age 75, both hemispheres 49.4
2007 Male, age 72, unknown 47.6
2316 Male, age 76, right hemisphere 47.2
1817 Female, age 42, unknown 46.1
1816 Male, age 51, unknown 45.4
2224 Female, age 72, unknown 41.1
1944 Female, age 72, unknown 39.0
2667 Female, age 75, unknown 36.2
2273 Male, age 74, both hemispheres 33.2
Red nucleus
nTPM: 66.4
2588 Male, age 74, left hemisphere 85.8
2503 Female, age 72, unknown 81.6
2227 Male, age 72, unknown 71.8
2769 Male, age 72, unknown 70.6
2584 Male, age 75, left hemisphere 67.3
1904 Male, age 53, unknown 66.7
1865 Male, age 51, unknown 63.7
1954 Female, age 42, unknown 59.9
2725 Female, age 75, unknown 59.9
2823 Male, age 76, right hemisphere 59.6
2785 Male, age 18, unknown 56.7
1821 Female, age 72, unknown 52.6
Substantia nigra
nTPM: 51.1
2665 Male, age 74, both hemispheres 66.2
2699 Male, age 18, unknown 60.5
2583 Male, age 75, right hemisphere 60.3
1851 Male, age 51, unknown 57.0
2590 Female, age 75, unknown 55.3
1916 Female, age 42, unknown 47.3
2409 Female, age 72, unknown 46.1
1889 Female, age 72, unknown 42.7
2241 Male, age 72, unknown 39.8
1941 Male, age 53, unknown 36.2
Superior colliculus
nTPM: 51.9
2664 Male, age 75, both hemispheres 66.5
1995 Male, age 72, unknown 62.6
1913 Female, age 42, unknown 53.4
2668 Female, age 75, unknown 52.5
2587 Male, age 74, left hemisphere 52.2
1796 Male, age 53, unknown 51.9
1839 Male, age 51, unknown 49.8
2261 Male, age 18, unknown 47.4
2087 Female, age 72, unknown 44.6
1895 Male, age 76, right hemisphere 38.5
Ventral tegmental area
nTPM: 48.6
2410 Female, age 72, unknown 53.7
2021 Male, age 53, unknown 51.5
2223 Female, age 72, unknown 50.4
1915 Female, age 42, unknown 47.6
1942 Male, age 51, unknown 46.8
2218 Male, age 76, both hemispheres 41.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 119.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.7
Samples: 139

Max nTPM: 330.6
Min nTPM: 28.7
Std nTPM: 61.4
Median nTPM: 100.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 330.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 327.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 295.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 291.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 259.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 251.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 251.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 250.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 248.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 234.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 233.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.3
FF:10158-103A5 76 years, female 37.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 29.4
Samples: 4

Max nTPM: 34.4
Min nTPM: 25.3
Sample A Female 34.4
Sample B Female 26.9
Sample C Male 25.3
Sample D Male 31.1
Midbrain
nTPM: 32.2
Samples: 4

Max nTPM: 49.6
Min nTPM: 23.4
Sample A Female 49.6
Sample B Female 28.5
Sample C Male 23.4
Sample D Male 27.1
Periaqueductal gray
nTPM: 26.9
Samples: 3

Max nTPM: 29.3
Min nTPM: 25.5
Sample B Female 25.9
Sample C Male 29.3
Sample D Male 25.5
Superior colliculi
nTPM: 29.3
Samples: 4

Max nTPM: 38.2
Min nTPM: 20.9
Sample A Female 38.2
Sample B Female 20.9
Sample C Male 27.1
Sample D Male 30.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 10.3
Sample A Male 12.0
Sample B Male 13.9
Sample C Female 10.3
Sample D Female 15.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68441616 Antisense, RP_041214_02_F11, Mouse strain C57BL/6J (56 days, male) 0.0

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