HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.6 nTPM
HPA Brain:36.3 nTPM
GTEx:9.6 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:11.6 nTPM
Mouse:8.6 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.3
Sample id Sample description nTPM
Hippocampus
nTPM: 32.5
1898 Male, age 80, left hemisphere 40.9
2621 Female, age 67, right hemisphere 35.0
2148 Female, age 91, left hemisphere 34.4
2529 Female, age 94, left hemisphere 30.5
1911 Female, age 85, right hemisphere 27.7
1855 Male, age 76, left hemisphere 26.5
Dentate gyrus
nTPM: 34.2
1927 Female, age 91, both hemispheres 41.7
2531 Female, age 67, both hemispheres 36.8
2530 Female, age 94, left hemisphere 36.3
2528 Male, age 74, both hemispheres 34.0
2010 Male, age 76, both hemispheres 30.0
2246 Female, age 85, both hemispheres 26.6
Entorhinal gyrus
nTPM: 35.6
2613 Female, age 94, left hemisphere 43.5
2764 Male, age 80, right hemisphere 40.7
2686 Male, age 75, right hemisphere 35.0
1787 Male, age 76, left hemisphere 33.9
1938 Female, age 85, left hemisphere 32.0
2117 Female, age 91, right hemisphere 28.7
Hippocampus, CA1
nTPM: 36.3
2749 Male, age 80, left hemisphere 64.6
2527 Male, age 74, both hemispheres 32.6
2082 Female, age 91, right hemisphere 29.0
1873 Female, age 85, both hemispheres 28.3
2045 Male, age 76, both hemispheres 26.9
Hippocampus, CA2
nTPM: 35.2
1963 Male, age 80, left hemisphere 52.6
2437 Female, age 94, left hemisphere 38.2
1892 Male, age 76, both hemispheres 33.2
2113 Female, age 91, right hemisphere 31.3
2249 Male, age 74, both hemispheres 29.5
1940 Female, age 85, left hemisphere 26.3
Hippocampus, CA3
nTPM: 34.1
2137 Male, age 80, left hemisphere 47.1
2620 Female, age 94, left hemisphere 36.7
2861 Female, age 67, both hemispheres 36.4
2436 Male, age 74, both hemispheres 29.4
1867 Male, age 76, both hemispheres 28.3
1891 Female, age 85, both hemispheres 26.4
Parahippocampal cortex
nTPM: 31.3
1990 Female, age 91, right hemisphere 38.3
2245 Female, age 91, both hemispheres 34.2
2250 Female, age 67, right hemisphere 32.9
1933 Female, age 85, both hemispheres 32.1
2622 Female, age 67, right hemisphere 31.3
1850 Male, age 80, both hemispheres 30.9
2693 Female, age 94, both hemispheres 30.3
2018 Male, age 76, both hemispheres 28.8
2692 Male, age 74, both hemispheres 27.6
2532 Female, age 72, left hemisphere 26.0
Perirhinal gyrus
nTPM: 35.0
1794 Male, age 80, right hemisphere 40.6
1847 Female, age 91, left hemisphere 39.2
2521 Female, age 94, right hemisphere 38.7
1841 Female, age 85, right hemisphere 30.2
2848 Male, age 76, right hemisphere 26.3
Subiculum
nTPM: 28.7
1977 Female, age 85, both hemispheres 34.9
1901 Male, age 80, both hemispheres 32.2
2619 Male, age 74, both hemispheres 30.5
2729 Female, age 91, right hemisphere 29.7
2438 Female, age 94, left hemisphere 23.1
2042 Male, age 76, both hemispheres 22.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.6
Samples: 197

Max nTPM: 43.3
Min nTPM: 0.4
Std nTPM: 7.4
Median nTPM: 8.2
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 43.3
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 37.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 36.4
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 28.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 28.0
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 27.3
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 26.4
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 26.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 26.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 26.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 24.3
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 11.6
FF:10169-103B7 60 years, female 12.4
FF:10153-102I9 76 years, female 10.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 11.6
Pig sample Sample description nTPM
Subiculum
nTPM: 8.7
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.1
Sample A Female 12.2
Sample B Female 7.6
Sample C Male 7.7
Sample D Male 7.1
Dorsal hippocampus
nTPM: 11.3
Samples: 4

Max nTPM: 14.4
Min nTPM: 9.2
Sample A Female 14.4
Sample B Female 11.5
Sample C Male 9.2
Sample D Male 10.1
Entorhinal cortex
nTPM: 10.0
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.5
Sample A Female 8.9
Sample B Female 11.1
Sample C Male 11.5
Sample D Male 8.5
Ventral hippocampus
nTPM: 11.6
Samples: 4

Max nTPM: 15.1
Min nTPM: 9.0
Sample A Female 11.2
Sample B Female 9.0
Sample C Male 15.1
Sample D Male 11.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.9
Samples: 4

Max nTPM: 7.1
Min nTPM: 4.1
Sample A Male 6.1
Sample B Male 7.1
Sample C Female 6.3
Sample D Female 4.1
Hippocampal formation
nTPM: 8.6
Samples: 4

Max nTPM: 10.0
Min nTPM: 6.9
Sample A Male 8.6
Sample B Male 8.9
Sample C Female 6.9
Sample D Female 10.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
71587643 Antisense, RP_050915_04_F09, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org