MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA Brain:35.4 nTPM
GTEx:7.2 nTPM
FANTOM5:6.9 Scaled Tags Per Million
Pig:11.5 nTPM
Mouse:4.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.5
2586 Male, age 75, left hemisphere 37.2
2019 Male, age 18, unknown 34.3
2219 Male, age 76, both hemispheres 31.3
1827 Male, age 72, unknown 31.2
2828 Female, age 72, unknown 27.7
2411 Female, age 72, unknown 26.4
2666 Male, age 74, left hemisphere 24.3
1833 Male, age 53, unknown 22.1
1870 Female, age 42, unknown 21.0
1830 Male, age 51, unknown 19.7
Dorsal raphe nucleus
nTPM: 28.3
2298 Female, age 72, unknown 37.1
1828 Male, age 53, unknown 30.0
2047 Male, age 72, unknown 29.2
2750 Male, age 76, both hemispheres 23.7
2016 Female, age 72, unknown 21.6
Inferior colliculus
nTPM: 29.9
2097 Female, age 72, unknown 39.2
1890 Male, age 53, unknown 29.7
1848 Female, age 42, unknown 26.3
2849 Male, age 72, unknown 24.3
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Periaquaductal grey, anterior
nTPM: 31.0
2502 Female, age 75, unknown 38.8
1795 Male, age 51, unknown 30.9
1947 Male, age 18, unknown 23.2
Periaquaductal grey, dorsal
nTPM: 23.8
1840 Male, age 53, unknown 26.5
2464 Female, age 72, unknown 25.1
1831 Male, age 72, unknown 24.9
2850 Male, age 76, both hemispheres 18.7
Periaquaductal grey, lateral
nTPM: 21.4
2140 Male, age 76, both hemispheres 22.7
2272 Male, age 74, both hemispheres 21.6
2053 Male, age 18, unknown 19.9
Pretectal area
nTPM: 29.7
2007 Male, age 72, unknown 44.8
1816 Male, age 51, unknown 42.2
1817 Female, age 42, unknown 37.1
1944 Female, age 72, unknown 37.1
1815 Male, age 53, unknown 29.3
2667 Female, age 75, unknown 25.6
2224 Female, age 72, unknown 25.1
2316 Male, age 76, right hemisphere 23.3
2273 Male, age 74, both hemispheres 21.8
2825 Male, age 18, unknown 20.8
2407 Male, age 75, both hemispheres 19.7
Red nucleus
nTPM: 24.4
2785 Male, age 18, unknown 37.5
2584 Male, age 75, left hemisphere 27.8
2588 Male, age 74, left hemisphere 26.8
2769 Male, age 72, unknown 25.8
2503 Female, age 72, unknown 25.2
2725 Female, age 75, unknown 25.2
2227 Male, age 72, unknown 24.5
1821 Female, age 72, unknown 21.9
1954 Female, age 42, unknown 21.5
2823 Male, age 76, right hemisphere 20.5
1904 Male, age 53, unknown 19.5
1865 Male, age 51, unknown 16.2
Substantia nigra
nTPM: 35.4
1916 Female, age 42, unknown 53.8
1851 Male, age 51, unknown 45.1
1941 Male, age 53, unknown 41.2
2665 Male, age 74, both hemispheres 38.8
1889 Female, age 72, unknown 37.4
2409 Female, age 72, unknown 30.6
2699 Male, age 18, unknown 29.4
2583 Male, age 75, right hemisphere 27.3
2241 Male, age 72, unknown 27.1
2590 Female, age 75, unknown 23.2
Superior colliculus
nTPM: 27.5
2087 Female, age 72, unknown 38.8
1796 Male, age 53, unknown 34.8
2668 Female, age 75, unknown 32.8
2261 Male, age 18, unknown 30.0
2664 Male, age 75, both hemispheres 29.9
1839 Male, age 51, unknown 24.2
1895 Male, age 76, right hemisphere 24.0
2587 Male, age 74, left hemisphere 23.2
1913 Female, age 42, unknown 19.2
1995 Male, age 72, unknown 18.3
Ventral tegmental area
nTPM: 32.1
1915 Female, age 42, unknown 39.5
2218 Male, age 76, both hemispheres 37.5
1942 Male, age 51, unknown 34.8
2410 Female, age 72, unknown 34.4
2021 Male, age 53, unknown 23.9
2223 Female, age 72, unknown 22.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.2
Samples: 139

Max nTPM: 29.7
Min nTPM: 0.0
Std nTPM: 6.5
Median nTPM: 5.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 29.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 27.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 27.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 25.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 22.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 21.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 20.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 19.5
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 19.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 17.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.9
FF:10158-103A5 76 years, female 6.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.4
Samples: 4

Max nTPM: 17.4
Min nTPM: 6.5
Sample A Female 17.4
Sample B Female 8.5
Sample C Male 9.3
Sample D Male 6.5
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.9
Sample A Female 9.8
Sample B Female 8.9
Sample C Male 10.0
Sample D Male 12.4
Periaqueductal gray
nTPM: 8.7
Samples: 3

Max nTPM: 10.2
Min nTPM: 7.3
Sample B Female 8.6
Sample C Male 10.2
Sample D Male 7.3
Superior colliculi
nTPM: 11.5
Samples: 4

Max nTPM: 14.5
Min nTPM: 9.9
Sample A Female 14.5
Sample B Female 10.9
Sample C Male 9.9
Sample D Male 10.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 5.6
Min nTPM: 3.7
Sample A Male 5.6
Sample B Male 4.1
Sample C Female 3.7
Sample D Female 4.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
71587643 Antisense, RP_050915_04_F09, Mouse strain C57BL/6J (56 days, male) 0.2

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