HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:38.1 nTPM
HPA Brain:55.8 nTPM
GTEx:38.1 nTPM
FANTOM5:79.9 Scaled Tags Per Million
Pig:165.4 nTPM
Mouse:56.2 nTPM
Allen mouse:11.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036290
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 55.8
Sample id Sample description nTPM
Hippocampus
nTPM: 49.5
1855 Male, age 76, left hemisphere 54.2
1898 Male, age 80, left hemisphere 53.9
1911 Female, age 85, right hemisphere 49.8
2529 Female, age 94, left hemisphere 48.4
2621 Female, age 67, right hemisphere 47.2
2148 Female, age 91, left hemisphere 43.3
Dentate gyrus
nTPM: 48.0
2010 Male, age 76, both hemispheres 55.0
2530 Female, age 94, left hemisphere 53.1
1927 Female, age 91, both hemispheres 51.9
2246 Female, age 85, both hemispheres 44.6
2531 Female, age 67, both hemispheres 43.5
2528 Male, age 74, both hemispheres 39.9
Entorhinal gyrus
nTPM: 48.1
1938 Female, age 85, left hemisphere 54.7
2613 Female, age 94, left hemisphere 54.0
1787 Male, age 76, left hemisphere 52.0
2764 Male, age 80, right hemisphere 44.1
2686 Male, age 75, right hemisphere 43.4
2117 Female, age 91, right hemisphere 40.3
Hippocampus, CA1
nTPM: 55.8
2749 Male, age 80, left hemisphere 92.3
1873 Female, age 85, both hemispheres 48.3
2045 Male, age 76, both hemispheres 48.2
2527 Male, age 74, both hemispheres 46.7
2082 Female, age 91, right hemisphere 43.3
Hippocampus, CA2
nTPM: 53.3
1963 Male, age 80, left hemisphere 66.9
1892 Male, age 76, both hemispheres 66.5
2113 Female, age 91, right hemisphere 47.3
2437 Female, age 94, left hemisphere 46.5
1940 Female, age 85, left hemisphere 46.3
2249 Male, age 74, both hemispheres 46.1
Hippocampus, CA3
nTPM: 55.4
2137 Male, age 80, left hemisphere 86.2
1867 Male, age 76, both hemispheres 61.8
2861 Female, age 67, both hemispheres 52.7
1891 Female, age 85, both hemispheres 47.4
2620 Female, age 94, left hemisphere 43.4
2436 Male, age 74, both hemispheres 40.8
Parahippocampal cortex
nTPM: 47.9
2245 Female, age 91, both hemispheres 51.7
2018 Male, age 76, both hemispheres 49.7
2250 Female, age 67, right hemisphere 49.1
1850 Male, age 80, both hemispheres 48.6
1933 Female, age 85, both hemispheres 47.6
2532 Female, age 72, left hemisphere 47.5
2622 Female, age 67, right hemisphere 46.8
2692 Male, age 74, both hemispheres 46.6
1990 Female, age 91, right hemisphere 45.8
2693 Female, age 94, both hemispheres 45.4
Perirhinal gyrus
nTPM: 49.4
1847 Female, age 91, left hemisphere 53.0
1794 Male, age 80, right hemisphere 51.1
1841 Female, age 85, right hemisphere 50.1
2521 Female, age 94, right hemisphere 50.0
2848 Male, age 76, right hemisphere 42.8
Subiculum
nTPM: 47.4
1901 Male, age 80, both hemispheres 55.9
2042 Male, age 76, both hemispheres 51.4
1977 Female, age 85, both hemispheres 49.4
2729 Female, age 91, right hemisphere 44.1
2619 Male, age 74, both hemispheres 43.6
2438 Female, age 94, left hemisphere 40.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.1
Samples: 197

Max nTPM: 71.8
Min nTPM: 18.2
Std nTPM: 8.6
Median nTPM: 36.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 71.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 71.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 63.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 61.7
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 57.5
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 57.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 56.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 55.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 55.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 54.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 54.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 79.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 79.9
FF:10153-102I9 76 years, female 95.5
FF:10169-103B7 60 years, female 64.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 165.4
Pig sample Sample description nTPM
Subiculum
nTPM: 121.9
Samples: 4

Max nTPM: 154.1
Min nTPM: 105.5
Sample A Female 154.1
Sample B Female 114.0
Sample C Male 105.5
Sample D Male 114.0
Dorsal hippocampus
nTPM: 114.7
Samples: 4

Max nTPM: 141.3
Min nTPM: 89.4
Sample A Female 141.3
Sample B Female 125.3
Sample C Male 102.8
Sample D Male 89.4
Entorhinal cortex
nTPM: 165.4
Samples: 4

Max nTPM: 181.1
Min nTPM: 146.9
Sample A Female 165.5
Sample B Female 167.9
Sample C Male 181.1
Sample D Male 146.9
Ventral hippocampus
nTPM: 100.8
Samples: 4

Max nTPM: 133.5
Min nTPM: 80.6
Sample A Female 84.2
Sample B Female 80.6
Sample C Male 104.7
Sample D Male 133.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 56.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.1
Samples: 4

Max nTPM: 66.6
Min nTPM: 51.1
Sample A Male 53.5
Sample B Male 53.3
Sample C Female 51.1
Sample D Female 66.6
Hippocampal formation
nTPM: 53.2
Samples: 4

Max nTPM: 57.2
Min nTPM: 46.0
Sample A Male 57.2
Sample B Male 54.4
Sample C Female 55.3
Sample D Female 46.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.7
67881782 Antisense, RP_040920_02_H11, Mouse strain C57BL/6J (56 days, male) 11.7

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