MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:104.6 nTPM
HPA Brain:137.0 nTPM
GTEx:104.6 nTPM
FANTOM5:11.6 Scaled Tags Per Million
Pig:162.1 nTPM
Mouse:119.9 nTPM
Allen mouse:5.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.9
2586 Male, age 75, left hemisphere 137.9
2219 Male, age 76, both hemispheres 129.2
2666 Male, age 74, left hemisphere 109.0
1827 Male, age 72, unknown 103.2
2019 Male, age 18, unknown 96.3
2828 Female, age 72, unknown 90.9
2411 Female, age 72, unknown 90.3
1833 Male, age 53, unknown 75.4
1870 Female, age 42, unknown 69.5
1830 Male, age 51, unknown 67.4
Dorsal raphe nucleus
nTPM: 84.2
2298 Female, age 72, unknown 97.6
2750 Male, age 76, both hemispheres 92.0
2047 Male, age 72, unknown 86.4
1828 Male, age 53, unknown 84.6
2016 Female, age 72, unknown 60.3
Inferior colliculus
nTPM: 84.1
2097 Female, age 72, unknown 100.4
1890 Male, age 53, unknown 85.4
1848 Female, age 42, unknown 79.4
2849 Male, age 72, unknown 71.1
Median raphe nucleus
nTPM: 102.4
2220 Male, age 76, midline 102.4
Periaquaductal grey, anterior
nTPM: 104.6
1795 Male, age 51, unknown 121.4
2502 Female, age 75, unknown 100.0
1947 Male, age 18, unknown 92.3
Periaquaductal grey, dorsal
nTPM: 71.3
1840 Male, age 53, unknown 85.2
1831 Male, age 72, unknown 72.8
2464 Female, age 72, unknown 72.5
2850 Male, age 76, both hemispheres 54.9
Periaquaductal grey, lateral
nTPM: 55.9
2053 Male, age 18, unknown 65.9
2140 Male, age 76, both hemispheres 57.6
2272 Male, age 74, both hemispheres 44.2
Pretectal area
nTPM: 102.7
1816 Male, age 51, unknown 161.2
1944 Female, age 72, unknown 149.2
2007 Male, age 72, unknown 147.6
1817 Female, age 42, unknown 143.7
1815 Male, age 53, unknown 123.3
2667 Female, age 75, unknown 91.0
2224 Female, age 72, unknown 79.5
2825 Male, age 18, unknown 70.6
2407 Male, age 75, both hemispheres 66.3
2316 Male, age 76, right hemisphere 54.3
2273 Male, age 74, both hemispheres 43.1
Red nucleus
nTPM: 71.8
2785 Male, age 18, unknown 100.0
2584 Male, age 75, left hemisphere 93.5
2503 Female, age 72, unknown 80.0
2588 Male, age 74, left hemisphere 76.4
1821 Female, age 72, unknown 74.2
2769 Male, age 72, unknown 72.7
2227 Male, age 72, unknown 72.2
1954 Female, age 42, unknown 69.8
1865 Male, age 51, unknown 63.3
1904 Male, age 53, unknown 63.3
2823 Male, age 76, right hemisphere 50.0
2725 Female, age 75, unknown 46.8
Substantia nigra
nTPM: 137.0
2665 Male, age 74, both hemispheres 209.4
1916 Female, age 42, unknown 204.5
1851 Male, age 51, unknown 156.1
1941 Male, age 53, unknown 132.6
1889 Female, age 72, unknown 131.0
2409 Female, age 72, unknown 122.4
2241 Male, age 72, unknown 122.3
2583 Male, age 75, right hemisphere 110.3
2699 Male, age 18, unknown 102.6
2590 Female, age 75, unknown 79.0
Superior colliculus
nTPM: 105.3
2668 Female, age 75, unknown 253.6
2087 Female, age 72, unknown 137.2
1796 Male, age 53, unknown 120.7
2261 Male, age 18, unknown 105.8
2664 Male, age 75, both hemispheres 91.6
1895 Male, age 76, right hemisphere 77.6
1913 Female, age 42, unknown 74.3
1839 Male, age 51, unknown 73.1
1995 Male, age 72, unknown 61.3
2587 Male, age 74, left hemisphere 57.4
Ventral tegmental area
nTPM: 119.0
2410 Female, age 72, unknown 155.7
2218 Male, age 76, both hemispheres 154.4
1915 Female, age 42, unknown 124.1
2223 Female, age 72, unknown 106.1
1942 Male, age 51, unknown 98.0
2021 Male, age 53, unknown 75.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 104.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 104.6
Samples: 139

Max nTPM: 321.0
Min nTPM: 24.7
Std nTPM: 61.7
Median nTPM: 89.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 321.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 278.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 251.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 244.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 244.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 222.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 222.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 220.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 214.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 211.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 206.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.6
FF:10158-103A5 76 years, female 11.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 162.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.5
Samples: 4

Max nTPM: 153.6
Min nTPM: 64.4
Sample A Female 153.6
Sample B Female 78.3
Sample C Male 133.8
Sample D Male 64.4
Midbrain
nTPM: 143.7
Samples: 4

Max nTPM: 227.7
Min nTPM: 61.5
Sample A Female 61.5
Sample B Female 105.1
Sample C Male 227.7
Sample D Male 180.3
Periaqueductal gray
nTPM: 88.8
Samples: 3

Max nTPM: 108.6
Min nTPM: 67.6
Sample B Female 90.2
Sample C Male 108.6
Sample D Male 67.6
Superior colliculi
nTPM: 162.1
Samples: 4

Max nTPM: 217.2
Min nTPM: 111.5
Sample A Female 173.9
Sample B Female 111.5
Sample C Male 217.2
Sample D Male 145.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 119.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 119.9
Samples: 4

Max nTPM: 132.1
Min nTPM: 111.7
Sample A Male 132.1
Sample B Male 116.8
Sample C Female 111.7
Sample D Female 119.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.1
68745366 Antisense, RP_050210_01_G09, Mouse strain C57BL/6J (56 days, male) 5.1

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