HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:64.5 nTPM
GTEx:21.1 nTPM
FANTOM5:72.6 Scaled Tags Per Million
Pig:47.7 nTPM
Mouse:154.1 nTPM
Allen mouse:2.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA021911
Glial cells Not detected
Neuronal cells Not detected

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 64.5
Sample id Sample description nTPM
Hippocampus
nTPM: 45.3
1898 Male, age 80, left hemisphere 68.9
2148 Female, age 91, left hemisphere 47.8
2621 Female, age 67, right hemisphere 45.4
2529 Female, age 94, left hemisphere 39.3
1855 Male, age 76, left hemisphere 35.2
1911 Female, age 85, right hemisphere 35.1
Dentate gyrus
nTPM: 50.0
1927 Female, age 91, both hemispheres 66.3
2528 Male, age 74, both hemispheres 51.4
2531 Female, age 67, both hemispheres 47.8
2010 Male, age 76, both hemispheres 45.8
2246 Female, age 85, both hemispheres 45.5
2530 Female, age 94, left hemisphere 43.4
Entorhinal gyrus
nTPM: 49.1
2764 Male, age 80, right hemisphere 63.3
1938 Female, age 85, left hemisphere 54.4
2613 Female, age 94, left hemisphere 50.7
2686 Male, age 75, right hemisphere 46.5
1787 Male, age 76, left hemisphere 43.7
2117 Female, age 91, right hemisphere 35.9
Hippocampus, CA1
nTPM: 53.9
2749 Male, age 80, left hemisphere 84.0
1873 Female, age 85, both hemispheres 55.4
2527 Male, age 74, both hemispheres 46.0
2045 Male, age 76, both hemispheres 43.2
2082 Female, age 91, right hemisphere 41.1
Hippocampus, CA2
nTPM: 56.4
1963 Male, age 80, left hemisphere 72.8
1892 Male, age 76, both hemispheres 67.6
2437 Female, age 94, left hemisphere 59.1
1940 Female, age 85, left hemisphere 51.9
2249 Male, age 74, both hemispheres 46.1
2113 Female, age 91, right hemisphere 40.9
Hippocampus, CA3
nTPM: 51.1
2137 Male, age 80, left hemisphere 67.3
1867 Male, age 76, both hemispheres 53.2
2436 Male, age 74, both hemispheres 51.7
2620 Female, age 94, left hemisphere 49.7
1891 Female, age 85, both hemispheres 43.2
2861 Female, age 67, both hemispheres 41.8
Parahippocampal cortex
nTPM: 52.5
1850 Male, age 80, both hemispheres 71.0
2693 Female, age 94, both hemispheres 61.8
1990 Female, age 91, right hemisphere 57.8
1933 Female, age 85, both hemispheres 53.2
2250 Female, age 67, right hemisphere 50.7
2532 Female, age 72, left hemisphere 49.8
2245 Female, age 91, both hemispheres 49.4
2622 Female, age 67, right hemisphere 45.2
2692 Male, age 74, both hemispheres 44.6
2018 Male, age 76, both hemispheres 41.6
Perirhinal gyrus
nTPM: 64.5
1847 Female, age 91, left hemisphere 73.5
1794 Male, age 80, right hemisphere 72.3
1841 Female, age 85, right hemisphere 65.4
2521 Female, age 94, right hemisphere 62.1
2848 Male, age 76, right hemisphere 49.2
Subiculum
nTPM: 43.5
1977 Female, age 85, both hemispheres 51.6
1901 Male, age 80, both hemispheres 51.3
2619 Male, age 74, both hemispheres 45.9
2438 Female, age 94, left hemisphere 42.2
2729 Female, age 91, right hemisphere 35.9
2042 Male, age 76, both hemispheres 34.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.1
Samples: 197

Max nTPM: 59.6
Min nTPM: 7.3
Std nTPM: 10.4
Median nTPM: 18.5
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 59.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 51.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 49.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 47.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 47.0
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 45.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 44.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 44.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 43.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 43.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 43.0
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 72.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 72.6
FF:10169-103B7 60 years, female 79.9
FF:10153-102I9 76 years, female 65.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 47.7
Pig sample Sample description nTPM
Subiculum
nTPM: 44.0
Samples: 4

Max nTPM: 52.2
Min nTPM: 40.2
Sample A Female 52.2
Sample B Female 42.1
Sample C Male 41.6
Sample D Male 40.2
Dorsal hippocampus
nTPM: 47.1
Samples: 4

Max nTPM: 51.4
Min nTPM: 38.8
Sample A Female 51.4
Sample B Female 49.4
Sample C Male 48.7
Sample D Male 38.8
Entorhinal cortex
nTPM: 47.7
Samples: 4

Max nTPM: 59.9
Min nTPM: 42.8
Sample A Female 42.8
Sample B Female 59.9
Sample C Male 44.9
Sample D Male 43.1
Ventral hippocampus
nTPM: 44.3
Samples: 4

Max nTPM: 49.7
Min nTPM: 38.8
Sample A Female 49.7
Sample B Female 38.8
Sample C Male 45.6
Sample D Male 43.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 154.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 154.1
Samples: 4

Max nTPM: 161.1
Min nTPM: 142.6
Sample A Male 159.5
Sample B Male 161.1
Sample C Female 142.6
Sample D Female 153.0
Hippocampal formation
nTPM: 126.9
Samples: 4

Max nTPM: 137.2
Min nTPM: 118.2
Sample A Male 126.5
Sample B Male 125.5
Sample C Female 137.2
Sample D Female 118.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.5
70192075 Antisense, RP_050517_01_B09, Mouse strain C57BL/6J (56 days, male) 2.8
74749996 Antisense, RP_060220_04_F10, Mouse strain C57BL/6J (56 days, male) 2.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org