MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.0 nTPM
HPA Brain:56.8 nTPM
GTEx:20.0 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:60.4 nTPM
Mouse:141.2 nTPM
Allen mouse:2.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
2019 Male, age 18, unknown 63.7
1827 Male, age 72, unknown 53.3
2586 Male, age 75, left hemisphere 50.4
2666 Male, age 74, left hemisphere 46.9
2219 Male, age 76, both hemispheres 41.9
2411 Female, age 72, unknown 38.2
2828 Female, age 72, unknown 36.0
1870 Female, age 42, unknown 34.9
1830 Male, age 51, unknown 32.9
1833 Male, age 53, unknown 32.5
Dorsal raphe nucleus
nTPM: 38.2
2298 Female, age 72, unknown 47.1
1828 Male, age 53, unknown 41.8
2047 Male, age 72, unknown 36.1
2750 Male, age 76, both hemispheres 34.6
2016 Female, age 72, unknown 31.7
Inferior colliculus
nTPM: 48.1
2097 Female, age 72, unknown 59.0
1890 Male, age 53, unknown 47.4
1848 Female, age 42, unknown 44.6
2849 Male, age 72, unknown 41.2
Median raphe nucleus
nTPM: 36.2
2220 Male, age 76, midline 36.2
Periaquaductal grey, anterior
nTPM: 46.1
2502 Female, age 75, unknown 49.4
1795 Male, age 51, unknown 44.7
1947 Male, age 18, unknown 44.2
Periaquaductal grey, dorsal
nTPM: 37.8
2464 Female, age 72, unknown 39.9
1831 Male, age 72, unknown 38.9
1840 Male, age 53, unknown 37.0
2850 Male, age 76, both hemispheres 35.2
Periaquaductal grey, lateral
nTPM: 43.9
2272 Male, age 74, both hemispheres 58.9
2053 Male, age 18, unknown 36.6
2140 Male, age 76, both hemispheres 36.3
Pretectal area
nTPM: 56.8
1816 Male, age 51, unknown 88.8
2007 Male, age 72, unknown 82.2
1944 Female, age 72, unknown 75.4
1817 Female, age 42, unknown 71.2
1815 Male, age 53, unknown 61.2
2667 Female, age 75, unknown 48.4
2273 Male, age 74, both hemispheres 45.2
2224 Female, age 72, unknown 41.8
2316 Male, age 76, right hemisphere 41.1
2407 Male, age 75, both hemispheres 35.4
2825 Male, age 18, unknown 34.6
Red nucleus
nTPM: 39.7
2785 Male, age 18, unknown 58.2
1821 Female, age 72, unknown 50.8
2725 Female, age 75, unknown 44.0
2588 Male, age 74, left hemisphere 40.7
1954 Female, age 42, unknown 38.0
2227 Male, age 72, unknown 36.7
2503 Female, age 72, unknown 36.6
1865 Male, age 51, unknown 35.5
2769 Male, age 72, unknown 34.9
2584 Male, age 75, left hemisphere 33.9
1904 Male, age 53, unknown 33.8
2823 Male, age 76, right hemisphere 33.8
Substantia nigra
nTPM: 49.5
1941 Male, age 53, unknown 66.3
1889 Female, age 72, unknown 64.0
1916 Female, age 42, unknown 58.7
2665 Male, age 74, both hemispheres 48.6
2241 Male, age 72, unknown 46.6
2409 Female, age 72, unknown 46.5
1851 Male, age 51, unknown 46.4
2583 Male, age 75, right hemisphere 43.5
2590 Female, age 75, unknown 41.1
2699 Male, age 18, unknown 33.6
Superior colliculus
nTPM: 45.3
2087 Female, age 72, unknown 61.2
2261 Male, age 18, unknown 54.3
1796 Male, age 53, unknown 48.8
2668 Female, age 75, unknown 48.8
1895 Male, age 76, right hemisphere 43.7
2587 Male, age 74, left hemisphere 42.9
2664 Male, age 75, both hemispheres 42.2
1839 Male, age 51, unknown 40.3
1913 Female, age 42, unknown 36.7
1995 Male, age 72, unknown 33.7
Ventral tegmental area
nTPM: 38.5
2410 Female, age 72, unknown 48.6
2218 Male, age 76, both hemispheres 42.5
1915 Female, age 42, unknown 39.4
1942 Male, age 51, unknown 38.6
2021 Male, age 53, unknown 31.0
2223 Female, age 72, unknown 30.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.0
Samples: 139

Max nTPM: 98.6
Min nTPM: 4.9
Std nTPM: 13.2
Median nTPM: 15.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 98.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 72.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 61.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 55.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 50.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 48.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 41.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 40.0
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 39.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 37.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 40.0
Samples: 4

Max nTPM: 53.6
Min nTPM: 24.8
Sample A Female 53.6
Sample B Female 34.1
Sample C Male 47.6
Sample D Male 24.8
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 77.7
Min nTPM: 36.8
Sample A Female 36.8
Sample B Female 45.4
Sample C Male 77.7
Sample D Male 60.5
Periaqueductal gray
nTPM: 46.1
Samples: 3

Max nTPM: 52.1
Min nTPM: 42.7
Sample B Female 42.7
Sample C Male 52.1
Sample D Male 43.5
Superior colliculi
nTPM: 60.4
Samples: 4

Max nTPM: 80.1
Min nTPM: 43.1
Sample A Female 59.2
Sample B Female 43.1
Sample C Male 80.1
Sample D Male 59.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.2
Samples: 4

Max nTPM: 157.2
Min nTPM: 123.7
Sample A Male 123.7
Sample B Male 142.9
Sample C Female 157.2
Sample D Female 141.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.0
70192075 Antisense, RP_050517_01_B09, Mouse strain C57BL/6J (56 days, male) 2.1
74749996 Antisense, RP_060220_04_F10, Mouse strain C57BL/6J (56 days, male) 2.0

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