MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.6 nTPM
HPA Brain:63.4 nTPM
GTEx:47.6 nTPM
FANTOM5:73.5 Scaled Tags Per Million
Pig:108.9 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 63.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.4
2586 Male, age 75, left hemisphere 80.8
2666 Male, age 74, left hemisphere 61.7
2019 Male, age 18, unknown 60.5
1827 Male, age 72, unknown 56.6
2828 Female, age 72, unknown 54.7
2411 Female, age 72, unknown 49.3
1870 Female, age 42, unknown 46.0
2219 Male, age 76, both hemispheres 42.8
1830 Male, age 51, unknown 41.8
1833 Male, age 53, unknown 39.5
Dorsal raphe nucleus
nTPM: 51.2
2047 Male, age 72, unknown 60.2
2750 Male, age 76, both hemispheres 55.8
1828 Male, age 53, unknown 51.5
2298 Female, age 72, unknown 51.4
2016 Female, age 72, unknown 37.1
Inferior colliculus
nTPM: 40.9
2097 Female, age 72, unknown 48.7
1890 Male, age 53, unknown 42.1
1848 Female, age 42, unknown 38.9
2849 Male, age 72, unknown 33.7
Median raphe nucleus
nTPM: 55.4
2220 Male, age 76, midline 55.4
Periaquaductal grey, anterior
nTPM: 56.2
1795 Male, age 51, unknown 62.9
2502 Female, age 75, unknown 54.3
1947 Male, age 18, unknown 51.4
Periaquaductal grey, dorsal
nTPM: 39.9
1831 Male, age 72, unknown 43.9
2850 Male, age 76, both hemispheres 42.1
2464 Female, age 72, unknown 37.9
1840 Male, age 53, unknown 35.8
Periaquaductal grey, lateral
nTPM: 40.7
2053 Male, age 18, unknown 45.6
2140 Male, age 76, both hemispheres 38.7
2272 Male, age 74, both hemispheres 37.9
Pretectal area
nTPM: 58.5
1816 Male, age 51, unknown 85.4
2007 Male, age 72, unknown 79.8
1944 Female, age 72, unknown 74.2
1817 Female, age 42, unknown 73.0
1815 Male, age 53, unknown 69.7
2407 Male, age 75, both hemispheres 51.1
2667 Female, age 75, unknown 48.0
2825 Male, age 18, unknown 43.4
2224 Female, age 72, unknown 42.8
2316 Male, age 76, right hemisphere 39.4
2273 Male, age 74, both hemispheres 36.4
Red nucleus
nTPM: 49.2
2584 Male, age 75, left hemisphere 71.5
2785 Male, age 18, unknown 58.4
2725 Female, age 75, unknown 54.7
2588 Male, age 74, left hemisphere 52.4
1821 Female, age 72, unknown 48.5
2823 Male, age 76, right hemisphere 48.2
1954 Female, age 42, unknown 44.9
1865 Male, age 51, unknown 44.1
1904 Male, age 53, unknown 44.0
2503 Female, age 72, unknown 43.0
2769 Male, age 72, unknown 40.5
2227 Male, age 72, unknown 39.6
Substantia nigra
nTPM: 63.4
1916 Female, age 42, unknown 81.1
1941 Male, age 53, unknown 72.0
1889 Female, age 72, unknown 68.0
2583 Male, age 75, right hemisphere 67.9
1851 Male, age 51, unknown 67.0
2241 Male, age 72, unknown 62.4
2665 Male, age 74, both hemispheres 58.3
2409 Female, age 72, unknown 57.1
2590 Female, age 75, unknown 52.7
2699 Male, age 18, unknown 47.7
Superior colliculus
nTPM: 52.3
2668 Female, age 75, unknown 65.3
2087 Female, age 72, unknown 64.6
2261 Male, age 18, unknown 60.7
1796 Male, age 53, unknown 58.8
2664 Male, age 75, both hemispheres 57.7
1913 Female, age 42, unknown 45.6
1995 Male, age 72, unknown 44.6
2587 Male, age 74, left hemisphere 42.8
1839 Male, age 51, unknown 42.6
1895 Male, age 76, right hemisphere 39.8
Ventral tegmental area
nTPM: 53.4
2410 Female, age 72, unknown 61.3
1915 Female, age 42, unknown 56.8
2218 Male, age 76, both hemispheres 55.9
2021 Male, age 53, unknown 49.7
2223 Female, age 72, unknown 48.8
1942 Male, age 51, unknown 48.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.6
Samples: 139

Max nTPM: 90.2
Min nTPM: 25.1
Std nTPM: 11.6
Median nTPM: 45.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 77.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 77.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 77.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 76.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 69.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 69.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 67.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 66.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 73.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 73.5
FF:10158-103A5 76 years, female 73.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 108.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 91.3
Samples: 4

Max nTPM: 108.2
Min nTPM: 64.4
Sample A Female 108.2
Sample B Female 64.4
Sample C Male 92.6
Sample D Male 99.8
Midbrain
nTPM: 108.9
Samples: 4

Max nTPM: 203.5
Min nTPM: 67.8
Sample A Female 203.5
Sample B Female 79.5
Sample C Male 84.9
Sample D Male 67.8
Periaqueductal gray
nTPM: 56.2
Samples: 3

Max nTPM: 64.2
Min nTPM: 51.6
Sample B Female 64.2
Sample C Male 52.8
Sample D Male 51.6
Superior colliculi
nTPM: 85.0
Samples: 4

Max nTPM: 100.5
Min nTPM: 59.2
Sample A Female 92.6
Sample B Female 59.2
Sample C Male 100.5
Sample D Male 87.7

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