MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.9 nTPM
HPA Brain:19.1 nTPM
GTEx:33.9 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:15.8 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.5
2586 Male, age 75, left hemisphere 20.9
1827 Male, age 72, unknown 20.4
2666 Male, age 74, left hemisphere 17.8
2828 Female, age 72, unknown 17.4
2411 Female, age 72, unknown 15.6
1833 Male, age 53, unknown 15.4
1870 Female, age 42, unknown 15.2
2219 Male, age 76, both hemispheres 15.1
2019 Male, age 18, unknown 14.8
1830 Male, age 51, unknown 12.4
Dorsal raphe nucleus
nTPM: 19.1
2298 Female, age 72, unknown 23.3
2047 Male, age 72, unknown 20.8
2016 Female, age 72, unknown 19.1
1828 Male, age 53, unknown 16.7
2750 Male, age 76, both hemispheres 15.7
Inferior colliculus
nTPM: 18.7
2097 Female, age 72, unknown 23.3
2849 Male, age 72, unknown 17.7
1848 Female, age 42, unknown 16.9
1890 Male, age 53, unknown 16.9
Median raphe nucleus
nTPM: 17.4
2220 Male, age 76, midline 17.4
Periaquaductal grey, anterior
nTPM: 18.3
2502 Female, age 75, unknown 18.9
1947 Male, age 18, unknown 18.4
1795 Male, age 51, unknown 17.8
Periaquaductal grey, dorsal
nTPM: 18.1
1840 Male, age 53, unknown 21.6
1831 Male, age 72, unknown 17.9
2850 Male, age 76, both hemispheres 16.7
2464 Female, age 72, unknown 16.3
Periaquaductal grey, lateral
nTPM: 17.3
2053 Male, age 18, unknown 19.6
2140 Male, age 76, both hemispheres 17.5
2272 Male, age 74, both hemispheres 14.8
Pretectal area
nTPM: 18.9
1816 Male, age 51, unknown 22.9
1944 Female, age 72, unknown 20.5
2224 Female, age 72, unknown 20.4
2007 Male, age 72, unknown 19.7
1817 Female, age 42, unknown 19.4
2667 Female, age 75, unknown 18.9
1815 Male, age 53, unknown 18.8
2273 Male, age 74, both hemispheres 18.5
2825 Male, age 18, unknown 17.4
2316 Male, age 76, right hemisphere 17.1
2407 Male, age 75, both hemispheres 13.9
Red nucleus
nTPM: 15.5
1821 Female, age 72, unknown 19.0
2725 Female, age 75, unknown 17.7
1904 Male, age 53, unknown 16.6
2503 Female, age 72, unknown 15.9
2227 Male, age 72, unknown 15.4
2785 Male, age 18, unknown 15.1
2823 Male, age 76, right hemisphere 15.0
2588 Male, age 74, left hemisphere 14.9
1954 Female, age 42, unknown 14.8
1865 Male, age 51, unknown 14.4
2769 Male, age 72, unknown 13.6
2584 Male, age 75, left hemisphere 13.5
Substantia nigra
nTPM: 17.7
1916 Female, age 42, unknown 24.6
1851 Male, age 51, unknown 20.6
2699 Male, age 18, unknown 20.0
2665 Male, age 74, both hemispheres 19.2
2583 Male, age 75, right hemisphere 17.3
1889 Female, age 72, unknown 16.6
2241 Male, age 72, unknown 16.6
1941 Male, age 53, unknown 14.9
2590 Female, age 75, unknown 14.0
2409 Female, age 72, unknown 13.6
Superior colliculus
nTPM: 17.6
1796 Male, age 53, unknown 21.9
2668 Female, age 75, unknown 18.2
2587 Male, age 74, left hemisphere 18.0
2664 Male, age 75, both hemispheres 17.9
1895 Male, age 76, right hemisphere 17.7
2087 Female, age 72, unknown 17.2
1839 Male, age 51, unknown 16.9
1913 Female, age 42, unknown 16.5
2261 Male, age 18, unknown 16.3
1995 Male, age 72, unknown 15.4
Ventral tegmental area
nTPM: 16.6
1915 Female, age 42, unknown 20.8
2218 Male, age 76, both hemispheres 17.7
1942 Male, age 51, unknown 17.1
2410 Female, age 72, unknown 16.3
2021 Male, age 53, unknown 15.6
2223 Female, age 72, unknown 12.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.9
Samples: 139

Max nTPM: 63.3
Min nTPM: 18.5
Std nTPM: 7.0
Median nTPM: 33.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 63.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 57.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 55.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 50.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 49.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 47.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 45.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 44.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 43.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 42.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 23.8
Samples: 4

Max nTPM: 31.2
Min nTPM: 19.0
Sample A Female 31.2
Sample B Female 21.9
Sample C Male 23.1
Sample D Male 19.0
Midbrain
nTPM: 23.7
Samples: 4

Max nTPM: 25.5
Min nTPM: 20.9
Sample A Female 25.2
Sample B Female 20.9
Sample C Male 25.5
Sample D Male 23.0
Periaqueductal gray
nTPM: 20.1
Samples: 3

Max nTPM: 20.9
Min nTPM: 19.2
Sample B Female 20.3
Sample C Male 20.9
Sample D Male 19.2
Superior colliculi
nTPM: 30.3
Samples: 4

Max nTPM: 36.9
Min nTPM: 23.9
Sample A Female 36.9
Sample B Female 35.2
Sample C Male 25.2
Sample D Male 23.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 18.5
Min nTPM: 12.2
Sample A Male 18.5
Sample B Male 14.7
Sample C Female 12.2
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68162257 Antisense, RP_041122_02_F02, Mouse strain C57BL/6J (56 days, male) 0.1

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