MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.9 nTPM
HPA Brain:41.2 nTPM
GTEx:18.9 nTPM
FANTOM5:49.5 Scaled Tags Per Million
Pig:8.1 nTPM
Mouse:22.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.3
2586 Male, age 75, left hemisphere 51.6
2019 Male, age 18, unknown 50.7
2666 Male, age 74, left hemisphere 46.1
2828 Female, age 72, unknown 41.5
1827 Male, age 72, unknown 37.9
1833 Male, age 53, unknown 36.3
1830 Male, age 51, unknown 34.6
1870 Female, age 42, unknown 34.3
2411 Female, age 72, unknown 33.3
2219 Male, age 76, both hemispheres 26.5
Dorsal raphe nucleus
nTPM: 31.5
1828 Male, age 53, unknown 33.2
2298 Female, age 72, unknown 33.1
2750 Male, age 76, both hemispheres 32.2
2047 Male, age 72, unknown 29.9
2016 Female, age 72, unknown 29.4
Inferior colliculus
nTPM: 34.0
1848 Female, age 42, unknown 35.7
2097 Female, age 72, unknown 35.7
1890 Male, age 53, unknown 32.8
2849 Male, age 72, unknown 31.9
Median raphe nucleus
nTPM: 28.4
2220 Male, age 76, midline 28.4
Periaquaductal grey, anterior
nTPM: 37.1
1795 Male, age 51, unknown 39.6
2502 Female, age 75, unknown 38.1
1947 Male, age 18, unknown 33.5
Periaquaductal grey, dorsal
nTPM: 33.4
2850 Male, age 76, both hemispheres 36.5
1831 Male, age 72, unknown 35.6
2464 Female, age 72, unknown 32.3
1840 Male, age 53, unknown 29.3
Periaquaductal grey, lateral
nTPM: 34.4
2053 Male, age 18, unknown 36.2
2140 Male, age 76, both hemispheres 36.1
2272 Male, age 74, both hemispheres 30.7
Pretectal area
nTPM: 40.5
1817 Female, age 42, unknown 55.4
2007 Male, age 72, unknown 51.3
1816 Male, age 51, unknown 50.8
1815 Male, age 53, unknown 48.8
1944 Female, age 72, unknown 43.4
2407 Male, age 75, both hemispheres 37.2
2667 Female, age 75, unknown 34.8
2316 Male, age 76, right hemisphere 33.8
2273 Male, age 74, both hemispheres 30.6
2825 Male, age 18, unknown 30.4
2224 Female, age 72, unknown 29.2
Red nucleus
nTPM: 38.7
2785 Male, age 18, unknown 50.3
2588 Male, age 74, left hemisphere 44.1
2584 Male, age 75, left hemisphere 42.3
1904 Male, age 53, unknown 38.8
1865 Male, age 51, unknown 38.5
2227 Male, age 72, unknown 37.5
1821 Female, age 72, unknown 37.4
2823 Male, age 76, right hemisphere 36.9
2725 Female, age 75, unknown 36.0
2769 Male, age 72, unknown 35.8
2503 Female, age 72, unknown 33.6
1954 Female, age 42, unknown 33.5
Substantia nigra
nTPM: 33.6
1889 Female, age 72, unknown 42.7
2583 Male, age 75, right hemisphere 41.1
2665 Male, age 74, both hemispheres 40.6
2409 Female, age 72, unknown 32.7
1851 Male, age 51, unknown 32.4
2590 Female, age 75, unknown 32.3
1941 Male, age 53, unknown 32.2
1916 Female, age 42, unknown 29.1
2241 Male, age 72, unknown 29.1
2699 Male, age 18, unknown 24.1
Superior colliculus
nTPM: 41.2
2668 Female, age 75, unknown 49.4
2664 Male, age 75, both hemispheres 44.9
2261 Male, age 18, unknown 44.3
1913 Female, age 42, unknown 43.8
2087 Female, age 72, unknown 42.3
1995 Male, age 72, unknown 42.2
1796 Male, age 53, unknown 40.4
1895 Male, age 76, right hemisphere 36.2
2587 Male, age 74, left hemisphere 35.6
1839 Male, age 51, unknown 32.9
Ventral tegmental area
nTPM: 32.0
2410 Female, age 72, unknown 33.5
2223 Female, age 72, unknown 33.4
2218 Male, age 76, both hemispheres 32.9
1942 Male, age 51, unknown 32.8
2021 Male, age 53, unknown 31.8
1915 Female, age 42, unknown 27.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.9
Samples: 139

Max nTPM: 36.7
Min nTPM: 11.4
Std nTPM: 4.8
Median nTPM: 17.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 36.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 35.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 35.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 30.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 28.6
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 28.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 28.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 28.0
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 27.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 27.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 26.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.5
FF:10158-103A5 76 years, female 49.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.4
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.3
Sample A Female 6.2
Sample B Female 7.1
Sample C Male 5.3
Sample D Male 6.9
Midbrain
nTPM: 6.5
Samples: 4

Max nTPM: 8.1
Min nTPM: 5.5
Sample A Female 8.1
Sample B Female 5.5
Sample C Male 6.6
Sample D Male 5.8
Periaqueductal gray
nTPM: 5.1
Samples: 3

Max nTPM: 5.4
Min nTPM: 4.6
Sample B Female 5.4
Sample C Male 4.6
Sample D Male 5.2
Superior colliculi
nTPM: 8.1
Samples: 4

Max nTPM: 10.8
Min nTPM: 6.4
Sample A Female 7.6
Sample B Female 10.8
Sample C Male 6.4
Sample D Male 7.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 23.8
Min nTPM: 21.2
Sample A Male 22.2
Sample B Male 23.8
Sample C Female 22.8
Sample D Female 21.2

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