HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:13.2 nTPM
HPA Brain:20.3 nTPM
GTEx:13.2 nTPM
FANTOM5:87.5 Scaled Tags Per Million
Pig:59.3 nTPM
Mouse:53.7 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036483Antibody HPA036484
Glial cells HighLow
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 20.3
Sample id Sample description nTPM
Hippocampus
nTPM: 20.0
1898 Male, age 80, left hemisphere 25.9
2529 Female, age 94, left hemisphere 22.7
1855 Male, age 76, left hemisphere 21.7
1911 Female, age 85, right hemisphere 17.0
2148 Female, age 91, left hemisphere 16.3
2621 Female, age 67, right hemisphere 16.1
Dentate gyrus
nTPM: 17.1
1927 Female, age 91, both hemispheres 21.2
2530 Female, age 94, left hemisphere 20.8
2010 Male, age 76, both hemispheres 18.3
2246 Female, age 85, both hemispheres 15.1
2528 Male, age 74, both hemispheres 14.8
2531 Female, age 67, both hemispheres 12.5
Entorhinal gyrus
nTPM: 16.4
1938 Female, age 85, left hemisphere 20.0
2686 Male, age 75, right hemisphere 19.0
1787 Male, age 76, left hemisphere 16.5
2764 Male, age 80, right hemisphere 15.7
2117 Female, age 91, right hemisphere 14.7
2613 Female, age 94, left hemisphere 12.6
Hippocampus, CA1
nTPM: 18.9
2749 Male, age 80, left hemisphere 25.8
1873 Female, age 85, both hemispheres 22.5
2527 Male, age 74, both hemispheres 21.5
2045 Male, age 76, both hemispheres 14.2
2082 Female, age 91, right hemisphere 10.3
Hippocampus, CA2
nTPM: 18.7
1892 Male, age 76, both hemispheres 28.1
1963 Male, age 80, left hemisphere 24.0
2437 Female, age 94, left hemisphere 16.2
2249 Male, age 74, both hemispheres 15.3
1940 Female, age 85, left hemisphere 14.7
2113 Female, age 91, right hemisphere 14.0
Hippocampus, CA3
nTPM: 18.0
1867 Male, age 76, both hemispheres 20.9
2137 Male, age 80, left hemisphere 20.3
1891 Female, age 85, both hemispheres 19.7
2861 Female, age 67, both hemispheres 18.7
2436 Male, age 74, both hemispheres 15.6
2620 Female, age 94, left hemisphere 12.5
Parahippocampal cortex
nTPM: 18.3
1850 Male, age 80, both hemispheres 24.8
2692 Male, age 74, both hemispheres 21.2
1933 Female, age 85, both hemispheres 20.7
2622 Female, age 67, right hemisphere 19.2
1990 Female, age 91, right hemisphere 17.5
2250 Female, age 67, right hemisphere 17.4
2532 Female, age 72, left hemisphere 17.4
2018 Male, age 76, both hemispheres 15.4
2245 Female, age 91, both hemispheres 15.4
2693 Female, age 94, both hemispheres 13.6
Perirhinal gyrus
nTPM: 20.3
1847 Female, age 91, left hemisphere 23.7
1841 Female, age 85, right hemisphere 22.6
1794 Male, age 80, right hemisphere 22.0
2848 Male, age 76, right hemisphere 18.2
2521 Female, age 94, right hemisphere 14.8
Subiculum
nTPM: 18.1
2438 Female, age 94, left hemisphere 22.7
1977 Female, age 85, both hemispheres 20.6
1901 Male, age 80, both hemispheres 19.0
2619 Male, age 74, both hemispheres 15.9
2042 Male, age 76, both hemispheres 15.3
2729 Female, age 91, right hemisphere 15.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.2
Samples: 197

Max nTPM: 24.7
Min nTPM: 7.1
Std nTPM: 2.7
Median nTPM: 12.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 24.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 20.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 20.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 19.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 19.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 19.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 19.4
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 18.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 18.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 18.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 18.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 87.5
FF:10169-103B7 60 years, female 130.8
FF:10153-102I9 76 years, female 44.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 59.3
Pig sample Sample description nTPM
Subiculum
nTPM: 47.8
Samples: 4

Max nTPM: 57.6
Min nTPM: 44.3
Sample A Female 57.6
Sample B Female 45.1
Sample C Male 44.3
Sample D Male 44.3
Dorsal hippocampus
nTPM: 59.3
Samples: 4

Max nTPM: 73.4
Min nTPM: 43.9
Sample A Female 73.4
Sample B Female 58.5
Sample C Male 61.4
Sample D Male 43.9
Entorhinal cortex
nTPM: 49.1
Samples: 4

Max nTPM: 54.2
Min nTPM: 41.3
Sample A Female 47.2
Sample B Female 54.2
Sample C Male 53.7
Sample D Male 41.3
Ventral hippocampus
nTPM: 49.5
Samples: 4

Max nTPM: 60.2
Min nTPM: 41.3
Sample A Female 50.1
Sample B Female 41.3
Sample C Male 46.4
Sample D Male 60.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 53.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 53.7
Samples: 4

Max nTPM: 61.2
Min nTPM: 48.0
Sample A Male 53.2
Sample B Male 52.3
Sample C Female 48.0
Sample D Female 61.2
Hippocampal formation
nTPM: 50.8
Samples: 4

Max nTPM: 55.8
Min nTPM: 43.5
Sample A Male 51.7
Sample B Male 55.8
Sample C Female 52.2
Sample D Female 43.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
74357720 Antisense, RP_060119_03_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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