HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:26.2 nTPM
HPA Brain:42.5 nTPM
GTEx:26.2 nTPM
FANTOM5:66.5 Scaled Tags Per Million
Pig:78.1 nTPM
Mouse:66.4 nTPM
Allen mouse:5.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007288
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.5
Sample id Sample description nTPM
Hippocampus
nTPM: 34.8
1898 Male, age 80, left hemisphere 45.5
1911 Female, age 85, right hemisphere 41.7
2529 Female, age 94, left hemisphere 35.7
1855 Male, age 76, left hemisphere 30.1
2148 Female, age 91, left hemisphere 28.2
2621 Female, age 67, right hemisphere 27.8
Dentate gyrus
nTPM: 32.8
1927 Female, age 91, both hemispheres 36.5
2246 Female, age 85, both hemispheres 36.3
2530 Female, age 94, left hemisphere 36.1
2010 Male, age 76, both hemispheres 33.2
2528 Male, age 74, both hemispheres 28.4
2531 Female, age 67, both hemispheres 26.2
Entorhinal gyrus
nTPM: 33.7
1787 Male, age 76, left hemisphere 37.9
1938 Female, age 85, left hemisphere 37.3
2686 Male, age 75, right hemisphere 34.7
2117 Female, age 91, right hemisphere 32.8
2764 Male, age 80, right hemisphere 32.7
2613 Female, age 94, left hemisphere 26.8
Hippocampus, CA1
nTPM: 39.1
2749 Male, age 80, left hemisphere 71.5
1873 Female, age 85, both hemispheres 40.0
2082 Female, age 91, right hemisphere 31.1
2527 Male, age 74, both hemispheres 29.0
2045 Male, age 76, both hemispheres 23.8
Hippocampus, CA2
nTPM: 38.7
1892 Male, age 76, both hemispheres 52.7
1963 Male, age 80, left hemisphere 42.9
1940 Female, age 85, left hemisphere 40.4
2113 Female, age 91, right hemisphere 34.7
2249 Male, age 74, both hemispheres 30.7
2437 Female, age 94, left hemisphere 30.6
Hippocampus, CA3
nTPM: 39.1
2137 Male, age 80, left hemisphere 72.2
1867 Male, age 76, both hemispheres 47.8
1891 Female, age 85, both hemispheres 36.4
2436 Male, age 74, both hemispheres 27.3
2861 Female, age 67, both hemispheres 26.6
2620 Female, age 94, left hemisphere 24.2
Parahippocampal cortex
nTPM: 34.8
1850 Male, age 80, both hemispheres 45.9
1933 Female, age 85, both hemispheres 41.5
2250 Female, age 67, right hemisphere 35.5
2245 Female, age 91, both hemispheres 34.4
1990 Female, age 91, right hemisphere 34.1
2018 Male, age 76, both hemispheres 32.3
2693 Female, age 94, both hemispheres 31.7
2692 Male, age 74, both hemispheres 31.5
2532 Female, age 72, left hemisphere 31.0
2622 Female, age 67, right hemisphere 30.2
Perirhinal gyrus
nTPM: 42.5
1841 Female, age 85, right hemisphere 47.2
1794 Male, age 80, right hemisphere 45.2
1847 Female, age 91, left hemisphere 44.1
2848 Male, age 76, right hemisphere 41.6
2521 Female, age 94, right hemisphere 34.3
Subiculum
nTPM: 36.0
1901 Male, age 80, both hemispheres 46.9
1977 Female, age 85, both hemispheres 39.0
2438 Female, age 94, left hemisphere 37.9
2042 Male, age 76, both hemispheres 36.6
2729 Female, age 91, right hemisphere 30.2
2619 Male, age 74, both hemispheres 25.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.2
Samples: 197

Max nTPM: 55.5
Min nTPM: 4.6
Std nTPM: 6.8
Median nTPM: 25.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 55.5
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 46.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 44.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 43.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 40.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 39.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 39.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 39.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 38.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 38.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 37.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.5
FF:10153-102I9 76 years, female 74.8
FF:10169-103B7 60 years, female 58.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 78.1
Pig sample Sample description nTPM
Subiculum
nTPM: 65.9
Samples: 4

Max nTPM: 81.2
Min nTPM: 58.7
Sample A Female 81.2
Sample B Female 64.1
Sample C Male 59.4
Sample D Male 58.7
Dorsal hippocampus
nTPM: 53.4
Samples: 4

Max nTPM: 56.9
Min nTPM: 49.3
Sample A Female 56.9
Sample B Female 56.0
Sample C Male 51.4
Sample D Male 49.3
Entorhinal cortex
nTPM: 78.1
Samples: 4

Max nTPM: 85.9
Min nTPM: 67.5
Sample A Female 79.7
Sample B Female 85.9
Sample C Male 79.4
Sample D Male 67.5
Ventral hippocampus
nTPM: 54.7
Samples: 4

Max nTPM: 63.1
Min nTPM: 48.5
Sample A Female 55.1
Sample B Female 51.9
Sample C Male 63.1
Sample D Male 48.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 65.7
Samples: 4

Max nTPM: 78.1
Min nTPM: 61.3
Sample A Male 61.5
Sample B Male 61.8
Sample C Female 61.3
Sample D Female 78.1
Hippocampal formation
nTPM: 66.4
Samples: 4

Max nTPM: 70.4
Min nTPM: 58.2
Sample A Male 68.6
Sample B Male 68.3
Sample C Female 70.4
Sample D Female 58.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.6
70805955 Antisense, RP_050725_02_E06, Mouse strain C57BL/6J (56 days, male) 7.7
68162264 Antisense, RP_041122_02_F10, Mouse strain C57BL/6J (56 days, male) 3.4

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