MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.8 nTPM
HPA Brain:46.0 nTPM
GTEx:18.8 nTPM
FANTOM5:83.8 Scaled Tags Per Million
Pig:64.8 nTPM
Mouse:54.6 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 46.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.7
2411 Female, age 72, unknown 47.7
2019 Male, age 18, unknown 46.6
1870 Female, age 42, unknown 45.1
1833 Male, age 53, unknown 43.8
1830 Male, age 51, unknown 43.1
2219 Male, age 76, both hemispheres 42.1
2828 Female, age 72, unknown 41.6
1827 Male, age 72, unknown 41.2
2666 Male, age 74, left hemisphere 40.7
2586 Male, age 75, left hemisphere 34.9
Dorsal raphe nucleus
nTPM: 40.9
2750 Male, age 76, both hemispheres 44.0
2016 Female, age 72, unknown 41.7
2298 Female, age 72, unknown 40.6
1828 Male, age 53, unknown 39.7
2047 Male, age 72, unknown 38.5
Inferior colliculus
nTPM: 40.4
2097 Female, age 72, unknown 41.2
1848 Female, age 42, unknown 40.8
1890 Male, age 53, unknown 40.7
2849 Male, age 72, unknown 38.9
Median raphe nucleus
nTPM: 41.0
2220 Male, age 76, midline 41.0
Periaquaductal grey, anterior
nTPM: 39.2
1947 Male, age 18, unknown 43.0
2502 Female, age 75, unknown 39.7
1795 Male, age 51, unknown 34.9
Periaquaductal grey, dorsal
nTPM: 39.7
2850 Male, age 76, both hemispheres 41.9
1831 Male, age 72, unknown 40.5
1840 Male, age 53, unknown 39.0
2464 Female, age 72, unknown 37.3
Periaquaductal grey, lateral
nTPM: 38.7
2140 Male, age 76, both hemispheres 39.9
2053 Male, age 18, unknown 38.5
2272 Male, age 74, both hemispheres 37.8
Pretectal area
nTPM: 41.2
2007 Male, age 72, unknown 44.7
1815 Male, age 53, unknown 43.7
1817 Female, age 42, unknown 42.9
1816 Male, age 51, unknown 42.4
2316 Male, age 76, right hemisphere 42.4
2407 Male, age 75, both hemispheres 40.7
2224 Female, age 72, unknown 39.8
2667 Female, age 75, unknown 39.6
2825 Male, age 18, unknown 39.3
2273 Male, age 74, both hemispheres 39.2
1944 Female, age 72, unknown 38.2
Red nucleus
nTPM: 46.0
1821 Female, age 72, unknown 52.4
2503 Female, age 72, unknown 52.1
1865 Male, age 51, unknown 49.4
2588 Male, age 74, left hemisphere 47.2
1954 Female, age 42, unknown 46.6
2725 Female, age 75, unknown 46.5
1904 Male, age 53, unknown 46.0
2823 Male, age 76, right hemisphere 44.5
2785 Male, age 18, unknown 43.6
2769 Male, age 72, unknown 43.1
2227 Male, age 72, unknown 41.9
2584 Male, age 75, left hemisphere 39.3
Substantia nigra
nTPM: 43.0
2241 Male, age 72, unknown 46.9
1889 Female, age 72, unknown 46.2
1851 Male, age 51, unknown 45.2
1916 Female, age 42, unknown 43.2
1941 Male, age 53, unknown 43.2
2590 Female, age 75, unknown 43.2
2409 Female, age 72, unknown 41.3
2699 Male, age 18, unknown 41.0
2583 Male, age 75, right hemisphere 40.4
2665 Male, age 74, both hemispheres 39.7
Superior colliculus
nTPM: 40.6
2587 Male, age 74, left hemisphere 44.9
1913 Female, age 42, unknown 44.5
1995 Male, age 72, unknown 44.3
1895 Male, age 76, right hemisphere 43.5
1839 Male, age 51, unknown 40.8
2668 Female, age 75, unknown 40.6
1796 Male, age 53, unknown 39.0
2261 Male, age 18, unknown 38.9
2087 Female, age 72, unknown 37.6
2664 Male, age 75, both hemispheres 32.2
Ventral tegmental area
nTPM: 41.1
2410 Female, age 72, unknown 45.6
1915 Female, age 42, unknown 41.1
2218 Male, age 76, both hemispheres 40.7
2223 Female, age 72, unknown 40.7
2021 Male, age 53, unknown 40.1
1942 Male, age 51, unknown 38.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.8
Samples: 139

Max nTPM: 28.8
Min nTPM: 8.6
Std nTPM: 3.7
Median nTPM: 18.8
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 28.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 27.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 27.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 27.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 26.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 26.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 25.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 24.4
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 24.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 23.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 83.8
FF:10158-103A5 76 years, female 83.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 64.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 59.9
Samples: 4

Max nTPM: 63.4
Min nTPM: 56.2
Sample A Female 62.0
Sample B Female 57.9
Sample C Male 56.2
Sample D Male 63.4
Midbrain
nTPM: 63.5
Samples: 4

Max nTPM: 77.0
Min nTPM: 57.3
Sample A Female 77.0
Sample B Female 59.6
Sample C Male 60.2
Sample D Male 57.3
Periaqueductal gray
nTPM: 54.8
Samples: 3

Max nTPM: 55.6
Min nTPM: 54.0
Sample B Female 55.6
Sample C Male 54.0
Sample D Male 54.8
Superior colliculi
nTPM: 64.8
Samples: 4

Max nTPM: 69.1
Min nTPM: 62.3
Sample A Female 62.3
Sample B Female 64.0
Sample C Male 69.1
Sample D Male 63.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 54.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 54.6
Samples: 4

Max nTPM: 56.7
Min nTPM: 51.6
Sample A Male 51.6
Sample B Male 56.7
Sample C Female 55.1
Sample D Female 55.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
69134499 Antisense, RP_050321_03_A07, Mouse strain C57BL/6J (56 days, male) 0.4

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