MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.7 nTPM
HPA Brain:38.7 nTPM
GTEx:25.7 nTPM
FANTOM5:32.9 Scaled Tags Per Million
Pig:11.7 nTPM
Mouse:20.5 nTPM
Allen mouse:1.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.6
2019 Male, age 18, unknown 37.5
2411 Female, age 72, unknown 35.1
2586 Male, age 75, left hemisphere 33.1
1870 Female, age 42, unknown 32.8
1827 Male, age 72, unknown 31.9
2666 Male, age 74, left hemisphere 28.9
2219 Male, age 76, both hemispheres 28.6
1833 Male, age 53, unknown 27.2
2828 Female, age 72, unknown 25.8
1830 Male, age 51, unknown 25.0
Dorsal raphe nucleus
nTPM: 36.3
2298 Female, age 72, unknown 44.4
2047 Male, age 72, unknown 38.4
1828 Male, age 53, unknown 36.2
2750 Male, age 76, both hemispheres 34.2
2016 Female, age 72, unknown 28.3
Inferior colliculus
nTPM: 29.3
1890 Male, age 53, unknown 36.9
2097 Female, age 72, unknown 32.7
1848 Female, age 42, unknown 26.3
2849 Male, age 72, unknown 21.6
Median raphe nucleus
nTPM: 37.1
2220 Male, age 76, midline 37.1
Periaquaductal grey, anterior
nTPM: 35.1
1947 Male, age 18, unknown 39.2
1795 Male, age 51, unknown 33.5
2502 Female, age 75, unknown 32.7
Periaquaductal grey, dorsal
nTPM: 27.0
2850 Male, age 76, both hemispheres 30.7
1831 Male, age 72, unknown 26.6
1840 Male, age 53, unknown 26.5
2464 Female, age 72, unknown 24.2
Periaquaductal grey, lateral
nTPM: 27.8
2272 Male, age 74, both hemispheres 31.2
2053 Male, age 18, unknown 27.0
2140 Male, age 76, both hemispheres 25.2
Pretectal area
nTPM: 32.3
1816 Male, age 51, unknown 40.1
2007 Male, age 72, unknown 39.9
1944 Female, age 72, unknown 39.6
2667 Female, age 75, unknown 35.4
2273 Male, age 74, both hemispheres 35.2
1817 Female, age 42, unknown 34.5
1815 Male, age 53, unknown 30.9
2224 Female, age 72, unknown 30.9
2825 Male, age 18, unknown 24.7
2407 Male, age 75, both hemispheres 22.7
2316 Male, age 76, right hemisphere 21.3
Red nucleus
nTPM: 30.8
1821 Female, age 72, unknown 39.9
2588 Male, age 74, left hemisphere 33.9
1865 Male, age 51, unknown 33.0
1954 Female, age 42, unknown 32.1
1904 Male, age 53, unknown 31.9
2785 Male, age 18, unknown 31.2
2823 Male, age 76, right hemisphere 29.3
2725 Female, age 75, unknown 28.4
2769 Male, age 72, unknown 28.0
2227 Male, age 72, unknown 27.9
2503 Female, age 72, unknown 27.9
2584 Male, age 75, left hemisphere 25.9
Substantia nigra
nTPM: 38.7
1916 Female, age 42, unknown 50.3
2241 Male, age 72, unknown 50.1
1851 Male, age 51, unknown 45.7
2409 Female, age 72, unknown 40.6
1889 Female, age 72, unknown 40.3
1941 Male, age 53, unknown 38.4
2590 Female, age 75, unknown 38.1
2699 Male, age 18, unknown 28.4
2583 Male, age 75, right hemisphere 28.0
2665 Male, age 74, both hemispheres 26.7
Superior colliculus
nTPM: 29.0
2587 Male, age 74, left hemisphere 41.0
2261 Male, age 18, unknown 35.3
2087 Female, age 72, unknown 31.8
2668 Female, age 75, unknown 29.1
1913 Female, age 42, unknown 28.7
1796 Male, age 53, unknown 28.4
1895 Male, age 76, right hemisphere 27.5
1995 Male, age 72, unknown 24.3
1839 Male, age 51, unknown 23.3
2664 Male, age 75, both hemispheres 20.8
Ventral tegmental area
nTPM: 35.9
2410 Female, age 72, unknown 41.6
1915 Female, age 42, unknown 41.0
2218 Male, age 76, both hemispheres 39.6
1942 Male, age 51, unknown 33.2
2021 Male, age 53, unknown 30.3
2223 Female, age 72, unknown 29.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 48.3
Min nTPM: 9.6
Std nTPM: 7.6
Median nTPM: 25.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 48.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 47.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 46.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 42.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 39.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 39.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 38.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 37.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 37.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 36.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.9
FF:10158-103A5 76 years, female 32.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.2
Sample A Female 13.4
Sample B Female 10.2
Sample C Male 11.8
Sample D Male 10.4
Midbrain
nTPM: 11.7
Samples: 4

Max nTPM: 14.5
Min nTPM: 9.6
Sample A Female 14.5
Sample B Female 11.2
Sample C Male 11.5
Sample D Male 9.6
Periaqueductal gray
nTPM: 11.4
Samples: 3

Max nTPM: 11.6
Min nTPM: 11.2
Sample B Female 11.4
Sample C Male 11.6
Sample D Male 11.2
Superior colliculi
nTPM: 11.2
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.3
Sample A Female 12.1
Sample B Female 9.3
Sample C Male 12.6
Sample D Male 10.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.5
Samples: 4

Max nTPM: 21.5
Min nTPM: 19.4
Sample A Male 19.4
Sample B Male 21.2
Sample C Female 20.0
Sample D Female 21.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.2
324008 Antisense, RP_040617_01_B01, Mouse strain C57BL/6J (56 days, male) 1.7
71608351 Antisense, RP_050927_01_E07, Mouse strain C57BL/6J (56 days, male) 0.6

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