MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.7 nTPM
HPA Brain:111.0 nTPM
GTEx:69.7 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:74.6 nTPM
Mouse:157.2 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 111.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.8
2411 Female, age 72, unknown 96.5
1833 Male, age 53, unknown 89.1
1827 Male, age 72, unknown 85.7
2219 Male, age 76, both hemispheres 84.6
1870 Female, age 42, unknown 83.0
1830 Male, age 51, unknown 80.6
2666 Male, age 74, left hemisphere 77.4
2828 Female, age 72, unknown 71.3
2019 Male, age 18, unknown 70.2
2586 Male, age 75, left hemisphere 69.9
Dorsal raphe nucleus
nTPM: 93.3
2298 Female, age 72, unknown 115.8
2047 Male, age 72, unknown 104.8
1828 Male, age 53, unknown 86.6
2750 Male, age 76, both hemispheres 80.4
2016 Female, age 72, unknown 78.9
Inferior colliculus
nTPM: 99.4
2097 Female, age 72, unknown 109.7
1848 Female, age 42, unknown 103.3
2849 Male, age 72, unknown 103.2
1890 Male, age 53, unknown 81.4
Median raphe nucleus
nTPM: 111.0
2220 Male, age 76, midline 111.0
Periaquaductal grey, anterior
nTPM: 95.0
1947 Male, age 18, unknown 112.4
1795 Male, age 51, unknown 91.3
2502 Female, age 75, unknown 81.2
Periaquaductal grey, dorsal
nTPM: 78.5
1840 Male, age 53, unknown 91.5
2464 Female, age 72, unknown 78.3
2850 Male, age 76, both hemispheres 76.8
1831 Male, age 72, unknown 67.6
Periaquaductal grey, lateral
nTPM: 89.4
2272 Male, age 74, both hemispheres 107.6
2053 Male, age 18, unknown 84.0
2140 Male, age 76, both hemispheres 76.6
Pretectal area
nTPM: 86.7
2224 Female, age 72, unknown 114.9
2273 Male, age 74, both hemispheres 100.8
2667 Female, age 75, unknown 95.3
2825 Male, age 18, unknown 94.7
2007 Male, age 72, unknown 85.9
1944 Female, age 72, unknown 83.0
1817 Female, age 42, unknown 80.1
2316 Male, age 76, right hemisphere 80.1
2407 Male, age 75, both hemispheres 79.5
1816 Male, age 51, unknown 74.3
1815 Male, age 53, unknown 65.1
Red nucleus
nTPM: 81.5
1821 Female, age 72, unknown 95.3
1954 Female, age 42, unknown 91.1
2227 Male, age 72, unknown 90.2
2769 Male, age 72, unknown 89.0
2725 Female, age 75, unknown 86.1
2503 Female, age 72, unknown 84.9
2823 Male, age 76, right hemisphere 76.9
1865 Male, age 51, unknown 76.5
1904 Male, age 53, unknown 74.7
2785 Male, age 18, unknown 74.0
2584 Male, age 75, left hemisphere 70.9
2588 Male, age 74, left hemisphere 68.1
Substantia nigra
nTPM: 87.1
1941 Male, age 53, unknown 118.0
1916 Female, age 42, unknown 114.3
1889 Female, age 72, unknown 88.5
1851 Male, age 51, unknown 88.2
2241 Male, age 72, unknown 85.0
2699 Male, age 18, unknown 82.1
2583 Male, age 75, right hemisphere 77.9
2665 Male, age 74, both hemispheres 73.3
2590 Female, age 75, unknown 73.1
2409 Female, age 72, unknown 70.9
Superior colliculus
nTPM: 78.4
1839 Male, age 51, unknown 97.1
1895 Male, age 76, right hemisphere 93.7
1796 Male, age 53, unknown 89.6
2668 Female, age 75, unknown 88.5
2587 Male, age 74, left hemisphere 84.4
2261 Male, age 18, unknown 80.4
2087 Female, age 72, unknown 76.4
1913 Female, age 42, unknown 60.0
1995 Male, age 72, unknown 57.8
2664 Male, age 75, both hemispheres 55.8
Ventral tegmental area
nTPM: 91.5
2410 Female, age 72, unknown 106.8
1915 Female, age 42, unknown 99.3
2218 Male, age 76, both hemispheres 90.4
1942 Male, age 51, unknown 88.4
2223 Female, age 72, unknown 83.3
2021 Male, age 53, unknown 80.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 69.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 69.7
Samples: 139

Max nTPM: 188.2
Min nTPM: 28.7
Std nTPM: 24.3
Median nTPM: 66.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 188.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 162.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 151.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 142.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 120.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 109.7
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 107.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 107.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 103.2
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 102.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 102.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 80.5
FF:10158-103A5 76 years, female 80.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 65.7
Samples: 4

Max nTPM: 84.5
Min nTPM: 49.2
Sample A Female 84.5
Sample B Female 49.2
Sample C Male 72.5
Sample D Male 56.6
Midbrain
nTPM: 74.6
Samples: 4

Max nTPM: 84.1
Min nTPM: 57.6
Sample A Female 84.1
Sample B Female 57.6
Sample C Male 81.8
Sample D Male 74.8
Periaqueductal gray
nTPM: 57.7
Samples: 3

Max nTPM: 67.5
Min nTPM: 52.7
Sample B Female 52.8
Sample C Male 67.5
Sample D Male 52.7
Superior colliculi
nTPM: 73.1
Samples: 4

Max nTPM: 84.0
Min nTPM: 51.7
Sample A Female 84.0
Sample B Female 51.7
Sample C Male 83.4
Sample D Male 73.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 157.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 157.2
Samples: 4

Max nTPM: 167.1
Min nTPM: 144.2
Sample A Male 167.1
Sample B Male 157.4
Sample C Female 144.2
Sample D Female 160.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
68191420 Antisense, RP_041129_01_B06, Mouse strain C57BL/6J (56 days, male) 8.7

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