MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:200.1 nTPM
HPA Brain:361.8 nTPM
GTEx:200.1 nTPM
FANTOM5:1082.0 Scaled Tags Per Million
Pig:422.6 nTPM
Mouse:338.8 nTPM
Allen mouse:7.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 361.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 251.8
2586 Male, age 75, left hemisphere 283.6
2666 Male, age 74, left hemisphere 270.1
1870 Female, age 42, unknown 260.6
2019 Male, age 18, unknown 258.4
2411 Female, age 72, unknown 249.2
1827 Male, age 72, unknown 244.4
2219 Male, age 76, both hemispheres 242.8
2828 Female, age 72, unknown 241.2
1833 Male, age 53, unknown 238.8
1830 Male, age 51, unknown 228.8
Dorsal raphe nucleus
nTPM: 298.3
2047 Male, age 72, unknown 382.5
2750 Male, age 76, both hemispheres 305.7
2298 Female, age 72, unknown 292.0
1828 Male, age 53, unknown 272.8
2016 Female, age 72, unknown 238.5
Inferior colliculus
nTPM: 234.1
1890 Male, age 53, unknown 245.9
2097 Female, age 72, unknown 233.7
1848 Female, age 42, unknown 231.7
2849 Male, age 72, unknown 225.0
Median raphe nucleus
nTPM: 361.8
2220 Male, age 76, midline 361.8
Periaquaductal grey, anterior
nTPM: 248.1
1947 Male, age 18, unknown 274.7
1795 Male, age 51, unknown 243.6
2502 Female, age 75, unknown 225.8
Periaquaductal grey, dorsal
nTPM: 245.0
2850 Male, age 76, both hemispheres 275.8
1840 Male, age 53, unknown 250.6
1831 Male, age 72, unknown 241.1
2464 Female, age 72, unknown 212.3
Periaquaductal grey, lateral
nTPM: 229.3
2053 Male, age 18, unknown 232.5
2140 Male, age 76, both hemispheres 227.8
2272 Male, age 74, both hemispheres 227.5
Pretectal area
nTPM: 265.1
1817 Female, age 42, unknown 311.8
1816 Male, age 51, unknown 309.9
1944 Female, age 72, unknown 300.6
1815 Male, age 53, unknown 296.7
2007 Male, age 72, unknown 283.7
2667 Female, age 75, unknown 269.7
2407 Male, age 75, both hemispheres 256.3
2273 Male, age 74, both hemispheres 230.6
2825 Male, age 18, unknown 227.4
2224 Female, age 72, unknown 227.3
2316 Male, age 76, right hemisphere 202.1
Red nucleus
nTPM: 257.4
1821 Female, age 72, unknown 313.6
2725 Female, age 75, unknown 305.2
1954 Female, age 42, unknown 261.4
2503 Female, age 72, unknown 260.4
1865 Male, age 51, unknown 258.1
1904 Male, age 53, unknown 258.1
2584 Male, age 75, left hemisphere 253.4
2785 Male, age 18, unknown 251.4
2588 Male, age 74, left hemisphere 249.9
2769 Male, age 72, unknown 230.2
2227 Male, age 72, unknown 223.8
2823 Male, age 76, right hemisphere 222.7
Substantia nigra
nTPM: 305.7
1916 Female, age 42, unknown 367.2
2241 Male, age 72, unknown 331.0
1851 Male, age 51, unknown 329.3
2665 Male, age 74, both hemispheres 317.2
1941 Male, age 53, unknown 305.4
1889 Female, age 72, unknown 300.1
2409 Female, age 72, unknown 299.6
2699 Male, age 18, unknown 292.8
2583 Male, age 75, right hemisphere 275.1
2590 Female, age 75, unknown 239.5
Superior colliculus
nTPM: 252.3
2664 Male, age 75, both hemispheres 295.8
2668 Female, age 75, unknown 284.9
2087 Female, age 72, unknown 265.7
2261 Male, age 18, unknown 264.4
1796 Male, age 53, unknown 246.6
2587 Male, age 74, left hemisphere 242.5
1913 Female, age 42, unknown 240.6
1895 Male, age 76, right hemisphere 229.7
1839 Male, age 51, unknown 226.1
1995 Male, age 72, unknown 226.1
Ventral tegmental area
nTPM: 276.2
1915 Female, age 42, unknown 296.3
2218 Male, age 76, both hemispheres 296.2
2223 Female, age 72, unknown 274.8
2410 Female, age 72, unknown 267.0
1942 Male, age 51, unknown 264.9
2021 Male, age 53, unknown 258.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 200.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 200.1
Samples: 139

Max nTPM: 313.1
Min nTPM: 124.8
Std nTPM: 32.3
Median nTPM: 200.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 313.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 307.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 290.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 268.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 267.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 261.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 259.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 257.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 252.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 249.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 246.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1082.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1082.0
FF:10158-103A5 76 years, female 1082.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 422.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 361.2
Samples: 4

Max nTPM: 413.0
Min nTPM: 321.4
Sample A Female 413.0
Sample B Female 338.7
Sample C Male 371.6
Sample D Male 321.4
Midbrain
nTPM: 400.1
Samples: 4

Max nTPM: 482.5
Min nTPM: 327.9
Sample A Female 482.5
Sample B Female 359.8
Sample C Male 430.0
Sample D Male 327.9
Periaqueductal gray
nTPM: 323.2
Samples: 3

Max nTPM: 339.7
Min nTPM: 310.0
Sample B Female 319.8
Sample C Male 339.7
Sample D Male 310.0
Superior colliculi
nTPM: 422.6
Samples: 4

Max nTPM: 438.8
Min nTPM: 398.2
Sample A Female 427.5
Sample B Female 426.0
Sample C Male 438.8
Sample D Male 398.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 338.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 338.8
Samples: 4

Max nTPM: 355.1
Min nTPM: 316.3
Sample A Male 316.3
Sample B Male 347.4
Sample C Female 355.1
Sample D Female 336.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.4
69671965 Antisense, RP_050428_02_G01, Mouse strain C57BL/6J (56 days, male) 14.8
70795766 Antisense, RP_050712_01_H11, Mouse strain C57BL/6J (56 days, male) 0.1

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